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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtcgaattccattgtgctatgttgatgatttgagcacacgttcgtcaattttttagttttcctgaagaagaagctgttttactttcttttgtttgcagTGCTGAATTTTTGGGCCTTCTCTGCTTCCTTTACCTTTGCGATCGAACCAACACCTTCTCTGCATCTAGAAAG

Basic information

species Physcomitrella patens
transcript PP1S74_21V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100362992|gb|BY984303.1|BY984303
EST:     ACTTTGAATGAAACCTTTCTGGTGGAGAACCGCCTCACTTTGAGAGCTAT                         TGCTGAATTTTTGGGCCTTCTCTGCTTCCTTTACCTTTGCGATCGAACCAA
genomic: ACTTTGAATGAAACCTTTCTGGTGGAGAACCGCCTCACTTTGAGAGCTATgtaagggttc ... ttgtttgcagTGCTGAATTTTTGGGCCTTCTCTGCTTCCTTTACCTTTGCGATCGAACCAA
EST: gi|100439772|gb|BY962100.1|BY962100
EST:     ACTTTGAATGAAACCTTTCTGGTGGAGAACCGCCTCACTTTGAGAGCTAT                         TGCTGAATTTTTGGGCCTTCTCTGCTTCCTTTACCTTTGCGATCGAACCAA
genomic: ACTTTGAATGAAACCTTTCTGGTGGAGAACCGCCTCACTTTGAGAGCTATgtaagggttc ... ttgtttgcagTGCTGAATTTTTGGGCCTTCTCTGCTTCCTTTACCTTTGCGATCGAACCAA
EST: gi|100444072|gb|BY963970.1|BY963970
EST:     AACCTTTCTGGTGGAGAACCGCCTCACTTTGAGAGCTAT                         TGCTGAATTTTTGGGCCTTCTCTGCTTCCTTTACCTTTGCGATCGAACCAA
genomic: AACCTTTCTGGTGGAGAACCGCCTCACTTTGAGAGCTATgtaagggttc ... ttgtttgcagTGCTGAATTTTTGGGCCTTCTCTGCTTCCTTTACCTTTGCGATCGAACCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcaattttttagttttcctgaagaagaagctgttttactttcttttgtttgcagTGCTGAATTTTTGGGCCTTCTCTGCTTCCTTTACCTTTGCGATCGAACCAACACCTTCTCTGCATCTAGAAAG
                              ctgttttactttcttt  CT-rich tract
                                 ttttactttctttt  TA-rich tract