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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttttaagacagctccaagctttcaaagttacacatgaagtcgaacggctttcactgtatcttgcattggcttcgaaatttaatgaaagccccttttcttgcacaagtttcaacatatgcacgtgttctcatcccaattttctaaaatgtttgttcttttaaactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAGGATGAGTATGGCGACCGTATGTTCAAGCTCGCCTCTGAGGGAGGTGTCA

Basic information

species Physcomitrella patens
transcript PP1S74_140V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208364850|gb|DC957887.1|DC957887
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|162162985|gb|FC338167.1|FC338167
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208383807|gb|DC928082.1|DC928082
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208386389|gb|DC937056.1|DC937056
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208370737|gb|DC936859.1|DC936859
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208372953|gb|DC940584.1|DC940584
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|18330051|gb|BJ162057.1|BJ162057
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|67704109|gb|BJ964342.1|BJ964342
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208391627|gb|DC938240.1|DC938240
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208360344|gb|DC930753.1|DC930753
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|162175919|gb|FC351597.1|FC351597
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208349412|gb|DC910429.1|DC910429
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208376730|gb|DC902925.1|DC902925
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208388767|gb|DC941776.1|DC941776
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|67704587|gb|BJ964820.1|BJ964820
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|18326813|gb|BJ158813.1|BJ158813
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208400413|gb|DC908640.1|DC908640
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|18363954|gb|BJ196027.1|BJ196027
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208354863|gb|DC934367.1|DC934367
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|162227966|gb|FC404586.1|FC404586
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208386871|gb|DC941575.1|DC941575
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|100377120|gb|BY968373.1|BY968373
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208356999|gb|DC930029.1|DC930029
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|162184644|gb|FC360842.1|FC360842
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|18361231|gb|BJ193296.1|BJ193296
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAGCGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208379780|gb|DC911665.1|DC911665
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|18373465|gb|BJ205043.1|BJ205043
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|67718979|gb|BJ969238.1|BJ969238
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|67575908|gb|BJ948732.1|BJ948732
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|18361452|gb|BJ193518.1|BJ193518
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208395695|gb|DC911816.1|DC911816
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|100383558|gb|BY950342.1|BY950342
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208398364|gb|DC912321.1|DC912321
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208358332|gb|DC930717.1|DC930717
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|162160598|gb|FC337173.1|FC337173
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|18363048|gb|BJ195120.1|BJ195120
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|67702174|gb|BJ962407.1|BJ962407
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208356504|gb|DC914338.1|DC914338
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|100426438|gb|BY958898.1|BY958898
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208353472|gb|DC938707.1|DC938707
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208394056|gb|DC957137.1|DC957137
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|100386323|gb|BY987990.1|BY987990
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|18373978|gb|BJ205556.1|BJ205556
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208399501|gb|DC908498.1|DC908498
EST:     GTGCTACTCTGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208355282|gb|DC929771.1|DC929771
EST:     GTGCTACTCATAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|100388054|gb|BY988527.1|BY988527
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208390491|gb|DC933748.1|DC933748
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208356213|gb|DC957331.1|DC957331
EST:     CCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTNGGTTGTNTTGGCANG
genomic: CCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|100374167|gb|BY985695.1|BY985695
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|100429892|gb|BY978141.1|BY978141
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|100366155|gb|BY967307.1|BY967307
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208383873|gb|DC911527.1|DC911527
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208370618|gb|DC936134.1|DC936134
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|100370755|gb|BY948500.1|BY948500
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|18331899|gb|BJ163911.1|BJ163911
EST:     ATTGCAGGAGGTGCTACTCAGAACACCATCANGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: ATTGCAGGAGGTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|67702385|gb|BJ962618.1|BJ962618
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208358299|gb|DC939411.1|DC939411
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|100379883|gb|BY949992.1|BY949992
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
EST: gi|208394240|gb|DC933908.1|DC933908
EST:     GTGCTACTCAGAACACCATCAGGATTGCCCAG                         TGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG
genomic: GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 32 (upstream exon), 32 (downstream exon)
Score: 17

GTGCTACTCAGAACACCATCAGGATTGCCCAGgtacttttaa ... aactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAGGATGAGTATGGCGACCGTATGTTCAAGCTCGCCTCTGAGGGAGGTGTCA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcacgtgttctcatcccaattttctaaaatgtttgttcttttaaactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAGGATGAGTATGGCGACCGTATGTTCAAGCTCGCCTCTGAGGGAGGTGTCA
                       ttctaaa  putative branch site (score: 17)
                   aattttctaaaatgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacttttaagacagctccaagctttcaaagttacacatgaagtcgaacggctttcactgtatcttgcattggcttcgaaatttaatgaaagccccttttcttgcacaagtttcaacatatgcacgtgttctcatcccaattttctaaaatgtttgttcttttaaactacacagTGGATGCTAGGTGAATCGAACGCAACTAGCTACTTTGGCTGTGTTGGCAAGGATGAGTATGGCGACCGTATGTTCAAGCTCGCCTCTGAGGGAGGTGTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT