1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgaaatttgatttgaattgagtttttcacctaatatggcatgatggttgtgtcggggcattcatgatatctaagttgatgttgttattttttcctggcagGGTGCACACCGCTGCACTGGGCAGCAATTCGGGGTAACTTGGAAGCTTGTACAGTGTTGGTACAGGCAGGTACCTTGGACAATTTGATGACTAAGGAGTC
species | Physcomitrella patens |
transcript | PP1S70_186V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCGATTGCTACTTTTTATGGACGCCTGTTTGGATCGAGTGGATAAAGAAG GGTGCACACCGCTGCACTGGGCAGCAATTCGGGGTAACTTGGAAGCTTGTAEST: gi|162203902|gb|FC380194.1|FC380194
genomic: TCGATTGCTACTTTTTATGGACGCCTGTTTGGATCGAGTGGATAAAGAAGgtgtgtagtg ... ttcctggcagGGTGCACACCGCTGCACTGGGCAGCAATTCGGGGTAACTTGGAAGCTTGTA
EST: TCGATTGCTACTTTTTATGGACGCCTGTTTGGATCGAGTGGATAAAGAAG GGTGCACACCGCTGCACTGGGCAGCAATTCGGGGTAACTTGGAAGCTTGTAEST: gi|100363514|gb|BY966427.1|BY966427
genomic: TCGATTGCTACTTTTTATGGACGCCTGTTTGGATCGAGTGGATAAAGAAGgtgtgtagtg ... ttcctggcagGGTGCACACCGCTGCACTGGGCAGCAATTCGGGGTAACTTGGAAGCTTGTA
EST: TCGATTGCTACTTTTTATGGACGCCTGTTTGGATCGAGTGGATAAAGAAG GGTGCACACCGCTGCACTGGGCAGCAATTCGGGGTAACTTGGAAGCTTGTAEST: gi|162197925|gb|FC373966.1|FC373966
genomic: TCGATTGCTACTTTTTATGGACGCCTGTTTGGATCGAGTGGATAAAGAAGgtgtgtagtg ... ttcctggcagGGTGCACACCGCTGCACTGGGCAGCAATTCGGGGTAACTTGGAAGCTTGTA
EST: GTTTGGATCGAGTGGATAAAGAAG GGTGCACACCGCTGCACTGGGCAGCAATTCGGGGTAACTTGGAAGCTTGTAEST: gi|162161000|gb|FC337011.1|FC337011
genomic: GTTTGGATCGAGTGGATAAAGAAGgtgtgtagtg ... ttcctggcagGGTGCACACCGCTGCACTGGGCAGCAATTCGGGGTAACTTGGAAGCTTGTA
EST: TCGATTGCTACTTTTTATGGACGCCTGTTTGGATCGAGTGGATAAAGAAG GGTGCACACCGCTGCACTGGGCAGCAATTCGGGGTAACTTGGAAGCTTGTAEST: gi|100406248|gb|BY991612.1|BY991612
genomic: TCGATTGCTACTTTTTATGGACGCCTGTTTGGATCGAGTGGATAAAGAAGgtgtgtagtg ... ttcctggcagGGTGCACACCGCTGCACTGGGCAGCAATTCGGGGTAACTTGGAAGCTTGTA
EST: TCGATTGCTACTTTTTATGGACGCCTGTTTGGATCGAGTGGATAAAGAAG GGTGCACACCGCTGCACTGGGCAGCAATTCGGGGTAACTTGGA-GCTTGTAEST: gi|162162808|gb|FC337862.1|FC337862
genomic: TCGATTGCTACTTTTTATGGACGCCTGTTTGGATCGAGTGGATAAAGAAGgtgtgtagtg ... ttcctggcagGGTGCACACCGCTGCACTGGGCAGCAATTCGGGGTAACTTGGAAGCTTGTA
EST: TCGATTGCTACTTTTTATGGACGCCTGTTTGGATCGAGTGGATAAAGAAG GGTGCACACCGCTGCACTGGGCAGCAATTCGGGGTAACTTGGAAGCTTGTA
genomic: TCGATTGCTACTTTTTATGGACGCCTGTTTGGATCGAGTGGATAAAGAAGgtgtgtagtg ... ttcctggcagGGTGCACACCGCTGCACTGGGCAGCAATTCGGGGTAACTTGGAAGCTTGTA
gttgtgtcggggcattcatgatatctaagttgatgttgttattttttcctggcagGGTGCACACCGCTGCACTGGGCAGCAATTCGGGGTAACTTGGAAGCTTGTACAGTGTTGGTACAGGCAGGTACCTTGGACAATTTGATGACTAAGGAGTC
agttgat putative branch site (score: 6)
ttgttattttttcct CT-rich tract
atgttgttatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaatttgatttgaattgagtttttcacctaatatggcatgatggttgtgtcggggcattcatgatatctaagttgatgttgttattttttcctggcagGGTGCACACCGCTGCACTGGGCAGCAATTCGGGGTAACTTGGAAGCTTGTACAGTGTTGGTACAGGCAGGTACCTTGGACAATTTGATGACTAAGGAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG