1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aagggatgattatttcggtctttgaacttcaaactgtgtctacacaacagcaggagctttgaatctttgttgttaacaaacacggcttttgttcctgtagATTTGAGGCCATGGCAGCGGAGCGGGCAGCTGCAAAAGCAGAGGCGAAATCAGAAAGTGATGCACTTAAGAAAACTGCTGCCCCTGAAGAGGCTTCCGGG
species | Physcomitrella patens |
transcript | PP1S70_161V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCAAAATTATGTTGCGCC A-TTGAGGCCATGGCAGCGGAGCGGGCAGCTGCAAAAGCAGAGGCGAAATCEST: gi|15727951|gb|BI740545.1|BI740545
genomic: TTCAAAATTATGTTGCGCCgtatgtactt ... gttcctgtagATTTGAGGCCATGGCAGCGGAGCGGGCAGCTGCAAAAGCAGAGGCGAAATC
EST: AGCAAATTCTGGAAGATTTACTTCATCTTGGTTCAAAATTATGTTGCGCC ATTTGAGGCCATGGCAGCGGAGCGGGCAGCTGCAAAAGCAGAGGCGAAATCEST: gi|162279794|gb|FC455702.1|FC455702
genomic: AGCAAATTCTGGAAGATTTACTTCATCTTGGTTCAAAATTATGTTGCGCCgtatgtactt ... gttcctgtagATTTGAGGCCATGGCAGCGGAGCGGGCAGCTGCAAAAGCAGAGGCGAAATC
EST: GAAGATTTACTTCATCTTGGTTCAAAAATATGTTGCGCC ATTTGAGGCCATGGCAGCGGAGCGGGCAGCTGCAAAAGCAGAGGCGAAATCEST: gi|162194412|gb|FC369752.1|FC369752
genomic: GAAGATTTACTTCATCTTGGTTCAAAATTATGTTGCGCCgtatgtactt ... gttcctgtagATTTGAGGCCATGGCAGCGGAGCGGGCAGCTGCAAAAGCAGAGGCGAAATC
EST: AGCAAATTCTGGAAGATTTACTTCATCTTGGTTCAAAATTATGTTGCGCC ATTTGAGGCCATGGCAGCGGAGCGGGCAGCTGCAAAAGCAGAGGCGAAATCEST: gi|67724914|gb|BJ975173.1|BJ975173
genomic: AGCAAATTCTGGAAGATTTACTTCATCTTGGTTCAAAATTATGTTGCGCCgtatgtactt ... gttcctgtagATTTGAGGCCATGGCAGCGGAGCGGGCAGCTGCAAAAGCAGAGGCGAAATC
EST: AGCAAATTCTGGAAGATTTACTTCATCTTGGTTCAAAATTATGTTGCGCC ATTTGAGGCCATGGCAGCGGAGCGGGCAGCTGCAAAAGCAGAGGCGAAATC
genomic: AGCAAATTCTGGAAGATTTACTTCATCTTGGTTCAAAATTATGTTGCGCCgtatgtactt ... gttcctgtagATTTGAGGCCATGGCAGCGGAGCGGGCAGCTGCAAAAGCAGAGGCGAAATC
aacagcaggagctttgaatctttgttgttaacaaacacggcttttgttcctgtagATTTGAGGCCATGGCAGCGGAGCGGGCAGCTGCAAAAGCAGAGGCGAAATCAGAAAGTGATGCACTTAAGAAAACTGCTGCCCCTGAAGAGGCTTCCGGG
tgttaac putative branch site (score: 2)
cttttgttcct putative PPT
ttaacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagggatgattatttcggtctttgaacttcaaactgtgtctacacaacagcaggagctttgaatctttgttgttaacaaacacggcttttgttcctgtagATTTGAGGCCATGGCAGCGGAGCGGGCAGCTGCAAAAGCAGAGGCGAAATCAGAAAGTGATGCACTTAAGAAAACTGCTGCCCCTGAAGAGGCTTCCGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - -ctacaca