1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagttctatcgtcccgctctttacgctgcgcaataatttttgtcatcaacttatgaaccttgtgagctcttttatcatttttttcgctaatactttttctttgatcgtggttgtagGAATGAACCTGGATTTCTGAAAATGTTCAATGGCTACTGGGACGTCGAACCTCGAATGGTCAATGGCAAGTCGATGGGCTGCAATGTGGTGGTTACACAG
species | Physcomitrella patens |
transcript | PP1S6_413V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAATGAAAGTTGAAGAAGATCCTAGTAGAAAGGCGGTATCTTATAAATT GAATGAACCTGGATTTCTGAAAATGTTCAATGGCTACTGGGACGTCGAACCEST: gi|162250674|gb|FC428265.1|FC428265
genomic: AAAATGAAAGTTGAAGAAGATCCTAGTAGAAAGGCGGTATCTTATAAATTgtgagttcta ... gtggttgtagGAATGAACCTGGATTTCTGAAAATGTTCAATGGCTACTGGGACGTCGAACC
EST: AAAATGAAAGTTGAAGAAGATCCTAGTAGAAAGGCGGTATCTTATAAATT GAATGAACCTGGATTTCTGAAAATGTTCAATGGCTACTGGGACGTCGAACCEST: gi|208398710|gb|DC916233.1|DC916233
genomic: AAAATGAAAGTTGAAGAAGATCCTAGTAGAAAGGCGGTATCTTATAAATTgtgagttcta ... gtggttgtagGAATGAACCTGGATTTCTGAAAATGTTCAATGGCTACTGGGACGTCGAACC
EST: AAAATGAAAGTTGAAGAAGATCCTAGTAGAAAGGCGGTATCTTATAAATT GAATGAACCTGGATTTCTGAAAATGTTCAATGGCTACTGGGACGTCGAACCEST: gi|162223140|gb|FC398770.1|FC398770
genomic: AAAATGAAAGTTGAAGAAGATCCTAGTAGAAAGGCGGTATCTTATAAATTgtgagttcta ... gtggttgtagGAATGAACCTGGATTTCTGAAAATGTTCAATGGCTACTGGGACGTCGAACC
EST: AAAATGAAAGTTGAAGAAGATCCTAGTAGAAAGGCGGTATCTTATAAATT GAATGAACCTGGATTTCTGAAAATGTTCAATGGCTACTGGGACGTCGAACC
genomic: AAAATGAAAGTTGAAGAAGATCCTAGTAGAAAGGCGGTATCTTATAAATTgtgagttcta ... gtggttgtagGAATGAACCTGGATTTCTGAAAATGTTCAATGGCTACTGGGACGTCGAACC
gtgagctcttttatcatttttttcgctaatactttttctttgatcgtggttgtagGAATGAACCTGGATTTCTGAAAATGTTCAATGGCTACTGGGACGTCGAACCTCGAATGGTCAATGGCAAGTCGATGGGCTGCAATGTGGTGGTTACACAG
tcttttatcatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttctatcgtcccgctctttacgctgcgcaataatttttgtcatcaacttatgaaccttgtgagctcttttatcatttttttcgctaatactttttctttgatcgtggttgtagGAATGAACCTGGATTTCTGAAAATGTTCAATGGCTACTGGGACGTCGAACCTCGAATGGTCAATGGCAAGTCGATGGGCTGCAATGTGGTGGTTACACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG