1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttggtgttgacatccccgcattagagtaaaattgcaagaagggcactgctagtaactctgcgtttagtgtaatgtacatgaatgattttgtgatgctgcacgtagagtgataaattggagcatgtggcaatgcagGCACGACAGGGGCATGGAGGCTATGTAGCTGCTTCGTCGTCGTCGTCTAGTTTGGAAGCCTCGTCTGAAGTGGCTGGCGCTTCAGGTGCAAGTGGTGCCA
species | Physcomitrella patens |
transcript | PP1S6_392V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATATTCAGGCGTGTCTGCAGCTTCTGGTTCGGCGGCGAATGGTGGGCAG GCACGACAGGGGCATGGAGGCTATGTAGCTGCGTCGTCGTCGTCGTCTAGTEST: gi|162265142|gb|FC441229.1|FC441229
genomic: CATATTCAGGCGTGTCTGCAGCTTCTGGTTCGGCGGCGAATGGTGGGCAGgttggtgttg ... ggcaatgcagGCACGACAGGGGCATGGAGGCTATGTAGCTGCTTCGTCGTCGTCGTCTAGT
EST: CATATTCAGGCGTGTCTGCAGCTTCTGGTTCGGCGGCGAATGGTGGGCAG GCACGACAGGGGCATGGAGGCTATGTAGCTGCTTCGTCGTCGTCGTCTAGT
genomic: CATATTCAGGCGTGTCTGCAGCTTCTGGTTCGGCGGCGAATGGTGGGCAGgttggtgttg ... ggcaatgcagGCACGACAGGGGCATGGAGGCTATGTAGCTGCTTCGTCGTCGTCGTCTAGT
aatgattttgtgatgctgcacgtagagtgataaattggagcatgtggcaatgcagGCACGACAGGGGCATGGAGGCTATGTAGCTGCTTCGTCGTCGTCGTCTAGTTTGGAAGCCTCGTCTGAAGTGGCTGGCGCTTCAGGTGCAAGTGGTGCCA
tgataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtgttgacatccccgcattagagtaaaattgcaagaagggcactgctagtaactctgcgtttagtgtaatgtacatgaatgattttgtgatgctgcacgtagagtgataaattggagcatgtggcaatgcagGCACGACAGGGGCATGGAGGCTATGTAGCTGCTTCGTCGTCGTCGTCTAGTTTGGAAGCCTCGTCTGAAGTGGCTGGCGCTTCAGGTGCAAGTGGTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG