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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttgagaagcatactttgtacatcccgtagcagcatgcaagttgtttcaactttaaactaattgaagcatagctaacagtcgttgtggatttgtggcagGATATTGGAATGGGGTGAGGATAGACGCATGGATAACAAGCGAAACAATTTGGCTAGATTTGCTGTGTTTTGGACTCTCCAA

Basic information

species Physcomitrella patens
transcript PP1S69_206V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208360863|gb|DC934759.1|DC934759
EST:     TGCTTGGCTGTGGCGTGGGGCCTTCGATTGTCAATCTTTCTTCTGTTGCG                         GATATTGGAATGGGGTGAGGATAGACGCATGGATAACAAGCGAAACAATTT
genomic: TGCTTGGCTGTGGCGTGGGGCCTTCGATTGTCAATCTTTCTTCTGTTGCGgtacggagtt ... tttgtggcagGATATTGGAATGGGGTGAGGATAGACGCATGGATAACAAGCGAAACAATTT
EST: gi|208364468|gb|DC958037.1|DC958037
EST:     TGCTTGGCTGTGGCGTGGGGCCTTCGATTGTCAATCTTTCTTCTGTTGCG                         GATATTGGAATGGGGTGAGGATAGACGCATGGATAACAAGCGAAACAATTT
genomic: TGCTTGGCTGTGGCGTGGGGCCTTCGATTGTCAATCTTTCTTCTGTTGCGgtacggagtt ... tttgtggcagGATATTGGAATGGGGTGAGGATAGACGCATGGATAACAAGCGAAACAATTT
EST: gi|208363913|gb|DC939562.1|DC939562
EST:     TGCTTGGCTGTGGCGTGGGGCCTTCGATTGTCAATCTTTCTTCTGTTGCG                         GATATTGGAATGGGGTGAGGATAGACGCATGGATAACAAGCGAAACAATTT
genomic: TGCTTGGCTGTGGCGTGGGGCCTTCGATTGTCAATCTTTCTTCTGTTGCGgtacggagtt ... tttgtggcagGATATTGGAATGGGGTGAGGATAGACGCATGGATAACAAGCGAAACAATTT
EST: gi|208392519|gb|DC933933.1|DC933933
EST:     TGCTTGGCTGTGGCGTGGGGCCTTCGATTGTCAATCTTTCTTCTGTTGCG                         GATATTGGAATGGGGTGAGGATAGACGCATGGATAACAAGCGAAACAATTT
genomic: TGCTTGGCTGTGGCGTGGGGCCTTCGATTGTCAATCTTTCTTCTGTTGCGgtacggagtt ... tttgtggcagGATATTGGAATGGGGTGAGGATAGACGCATGGATAACAAGCGAAACAATTT
EST: gi|208360887|gb|DC934783.1|DC934783
EST:     TGCTTGGCTGTGGCGTGGGGCCTTCGATTGTCAATCTTTCTTCTGTTGCG                         GATATTGGAATGGGGTGAGGATAGACGCATGGATAACAAGCGAAACAATTT
genomic: TGCTTGGCTGTGGCGTGGGGCCTTCGATTGTCAATCTTTCTTCTGTTGCGgtacggagtt ... tttgtggcagGATATTGGAATGGGGTGAGGATAGACGCATGGATAACAAGCGAAACAATTT
EST: gi|208358230|gb|DC934507.1|DC934507
EST:     TGCTTGGCTGTGGCGTGGGGCCTTCGATTGTCAATCTTTCTTCTGTTGCG                         GATATTGGAATGGGGTGAGGATAGACGCATGGATAACAAGCGAAACAATTT
genomic: TGCTTGGCTGTGGCGTGGGGCCTTCGATTGTCAATCTTTCTTCTGTTGCGgtacggagtt ... tttgtggcagGATATTGGAATGGGGTGAGGATAGACGCATGGATAACAAGCGAAACAATTT
EST: gi|208384874|gb|DC907487.1|DC907487
EST:     TGCTTGGCTGTGGCGTGGGGCCTTCGATTGTCAATCTTTCTTCTGTTGCG                         GATATTGGAATGGGGTGAGGATAGACGCATGGATAACAAGCGAAACAATTT
genomic: TGCTTGGCTGTGGCGTGGGGCCTTCGATTGTCAATCTTTCTTCTGTTGCGgtacggagtt ... tttgtggcagGATATTGGAATGGGGTGAGGATAGACGCATGGATAACAAGCGAAACAATTT
EST: gi|208377672|gb|DC932208.1|DC932208
EST:     TGCTTGGCTGTGGCGTGGGGCCTTCGATTGTCAATCTTTCTTCTGTTGCG                         GATATTGGAATGGGGTGAGGATAGACGCATGGATAACAAGCGAAACAATTT
genomic: TGCTTGGCTGTGGCGTGGGGCCTTCGATTGTCAATCTTTCTTCTGTTGCGgtacggagtt ... tttgtggcagGATATTGGAATGGGGTGAGGATAGACGCATGGATAACAAGCGAAACAATTT
EST: gi|208380943|gb|DC902973.1|DC902973
EST:     TGCTTGGCTGTGGCGTGGGGCCTTCGATTGTCAATCTTTCTTCTGTTGCG                         GATATTGGAATGGNGTGAGGATANACGCATGGATAACAAGCGAAACAATTT
genomic: TGCTTGGCTGTGGCGTGGGGCCTTCGATTGTCAATCTTTCTTCTGTTGCGgtacggagtt ... tttgtggcagGATATTGGAATGGGGTGAGGATAGACGCATGGATAACAAGCGAAACAATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcaactttaaactaattgaagcatagctaacagtcgttgtggatttgtggcagGATATTGGAATGGGGTGAGGATAGACGCATGGATAACAAGCGAAACAATTTGGCTAGATTTGCTGTGTTTTGGACTCTCCAA
                          agctaac  putative branch site (score: 2)
       tttaaactaattgaa  TA-rich tract