1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagccaactattacttgtccacttggtgcttacacaatatggtcccttcttttgatttccttactgctgctgcttctatttctttttatcctccagtattgatgacctgtattgaacttccttgcgaatggtaccagATTGAAGATTGCAGAGTTTATTGTAATCTTGATGAGTCAAATCCTGCCTAGTTCGAATAGAGGCTTTGGTCTAGGAGAAGGCCCAAAACCAGCATGGATG
species | Physcomitrella patens |
transcript | PP1S69_163V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCCAGCATTCG ATTGAAGATTGCAGAGTTTATTGTAATCTTGATGAGTCAAATCCTGCCTAGEST: gi|208374905|gb|DC956178.1|DC956178
genomic: TCCCAGCATTCGgtaagccaac ... atggtaccagATTGAAGATTGCAGAGTTTATTGTAATCTTGATGAGTCAAATCCTGCCTAG
EST: CGCAAAATTGCTGAAATGCTTAGAAACAGTCATCTGGATCCCAGCATTCG ATTGAAGATTGCAGAGTTTATTGTAATCTTGATGAGTCAAATCCTGCCTAGEST: gi|208371090|gb|DC955938.1|DC955938
genomic: CGCAAAATTGCTGAAATGCTTAGAAACAGTCATCTGGATCCCAGCATTCGgtaagccaac ... atggtaccagATTGAAGATTGCAGAGTTTATTGTAATCTTGATGAGTCAAATCCTGCCTAG
EST: CGCAAAATTGCTGAAATGCTTAGAAACAGTCATCTGGATCCCAGCATTCG ATTGAAGATTGCAGAGTTTATTGTAATCTTGATGAGTCAAATCCTGCCTAGEST: gi|67724049|gb|BJ974308.1|BJ974308
genomic: CGCAAAATTGCTGAAATGCTTAGAAACAGTCATCTGGATCCCAGCATTCGgtaagccaac ... atggtaccagATTGAAGATTGCAGAGTTTATTGTAATCTTGATGAGTCAAATCCTGCCTAG
EST: CGCAAAATTGCTGAAATGCTTAGAAACAGTCATCTGGATCCCAGCATTCG ATTGAAGATTGCAGAGTTTATTGTAATCTTGATGAGTCAAATCCTGCCTAGEST: gi|162260198|gb|FC436333.1|FC436333
genomic: CGCAAAATTGCTGAAATGCTTAGAAACAGTCATCTGGATCCCAGCATTCGgtaagccaac ... atggtaccagATTGAAGATTGCAGAGTTTATTGTAATCTTGATGAGTCAAATCCTGCCTAG
EST: CGCAAAATTGCTGAAATGCTTAGAAACAGTCATCTGGATCCCAGCATTCG ATTGAAGATTGCAGAGTTTATTGTAATCTTGATGAGTCAAATCCTGCCTAGEST: gi|37841005|gb|BJ599013.1|BJ599013
genomic: CGCAAAATTGCTGAAATGCTTAGAAACAGTCATCTGGATCCCAGCATTCGgtaagccaac ... atggtaccagATTGAAGATTGCAGAGTTTATTGTAATCTTGATGAGTCAAATCCTGCCTAG
EST: CGCAAAATTGCTGAAATGCTTAGAAACAGTCATCTGGATCCCAGCATTCG ATTGAAGATTGCAGAGTTTATTGTAATCTTGATGAGTCAAATCCTGCCTAG
genomic: CGCAAAATTGCTGAAATGCTTAGAAACAGTCATCTGGATCCCAGCATTCGgtaagccaac ... atggtaccagATTGAAGATTGCAGAGTTTATTGTAATCTTGATGAGTCAAATCCTGCCTAG
tttttatcctccagtattgatgacctgtattgaacttccttgcgaatggtaccagATTGAAGATTGCAGAGTTTATTGTAATCTTGATGAGTCAAATCCTGCCTAGTTCGAATAGAGGCTTTGGTCTAGGAGAAGGCCCAAAACCAGCATGGATG
tattgat putative branch site (score: 3)
tattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccaactattacttgtccacttggtgcttacacaatatggtcccttcttttgatttccttactgctgctgcttctatttctttttatcctccagtattgatgacctgtattgaacttccttgcgaatggtaccagATTGAAGATTGCAGAGTTTATTGTAATCTTGATGAGTCAAATCCTGCCTAGTTCGAATAGAGGCTTTGGTCTAGGAGAAGGCCCAAAACCAGCATGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA