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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttgtgaagtgggacgaggatggtatgtaccgtgcaaaaagtttaggtggtagagactaatgttacggttgataatgatatatcgtgttgttttggcagTGTGAAAGAATGGTGGCTGACTATGTGCCGCAAGCGTTCTTGGAGTTAGAGGCACTGCTTGGCCCACAAAAACTTTGCTATGAATCTGGGCTCTGCACGC

Basic information

species Physcomitrella patens
transcript PP1S69_133V6.6
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100370333|gb|BY985358.1|BY985358
EST:     CTGCAGATCACGTTTTGTGTGACAAACTTCAACCAGGGCTGAAAACGAAG                         TGTGAAAGAATGGTGGCTGACTATGTGCCGCAAGCGTTCTTGGAGTTAGAG
genomic: CTGCAGATCACGTTTTGTGTGACAAACTTCAACCAGGGCTGAAAACGAAGgttagtagtt ... gttttggcagTGTGAAAGAATGGTGGCTGACTATGTGCCGCAAGCGTTCTTGGAGTTAGAG
EST: gi|162278634|gb|FC455032.1|FC455032
EST:     TCACGTTTTGTGTGACAAACTTCAACCAGGGCTGAAAACGAAG                         TGTGAAAGAATGGTGGCTGACTATGTGCCGCAAGCGTTCTTGGAGTTAGAG
genomic: TCACGTTTTGTGTGACAAACTTCAACCAGGGCTGAAAACGAAGgttagtagtt ... gttttggcagTGTGAAAGAATGGTGGCTGACTATGTGCCGCAAGCGTTCTTGGAGTTAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggtggtagagactaatgttacggttgataatgatatatcgtgttgttttggcagTGTGAAAGAATGGTGGCTGACTATGTGCCGCAAGCGTTCTTGGAGTTAGAGGCACTGCTTGGCCCACAAAAACTTTGCTATGAATCTGGGCTCTGCACGC
                                           ttgtttt  CT-rich tract
                        ttgataatgatatat  TA-rich tract