1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgatttacgccatctataagcctctgtttcatatgccctacacgttagagattcgtactcggatctaggtaggaattcatatctaagtcactgttgcagATACGGTCAATTTACGTGGGAGGATCATCGGCCAGCTAACCGCCGTTGGAAAGGTACCAGTGGAGGACAAGCTTACTCTTTCAGTGGTTGTGACGACAGC
species | Physcomitrella patens |
transcript | PP1S65_2V6.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTCACAGTGGAACTGTTCTCGACTTGCCGTTTCTTTGCAGGTTCAATAG ATACGGTCAATTTACGTGGGAGGATCATCGGCCAGCTAACCGCCGTTGGAAEST: gi|208359473|gb|DC954026.1|DC954026
genomic: TGTCACAGTGGAACTGTTCTCGACTTGCCGTTTCTTTGCAGGTTCAATAGgtgagattat ... actgttgcagATACGGTCAATTTACGTGGGAGGATCATCGGCCAGCTAACCGCCGTTGGAA
EST: TGTCACAGTGGAACTGTTCTCGACTTGCCGTTTCTTTGCAGGTTCAATAG ATACGGTCAATTTACGTGGGAGGATCATCGGCCAGCTAACCGCCGTTGGAAEST: gi|37843824|gb|BJ601832.1|BJ601832
genomic: TGTCACAGTGGAACTGTTCTCGACTTGCCGTTTCTTTGCAGGTTCAATAGgtgagattat ... actgttgcagATACGGTCAATTTACGTGGGAGGATCATCGGCCAGCTAACCGCCGTTGGAA
EST: TGTCACAGTGGAACTGTTCTCGACTTGCCGTTTCTTTGCAGGTTCAATAG ATACGGTCAATTTACGTGGGAGGATCATCGGCCAGCTAACCGCCGTTGGAAEST: gi|67692649|gb|BJ952882.1|BJ952882
genomic: TGTCACAGTGGAACTGTTCTCGACTTGCCGTTTCTTTGCAGGTTCAATAGgtgagattat ... actgttgcagATACGGTCAATTTACGTGGGAGGATCATCGGCCAGCTAACCGCCGTTGGAA
EST: TGTCACAGTGGAACTGTTCTCGACTTGCCGTTTCTTTGCAGGTTCAATAG ATACGGTCAATTTACGTGGGAGGATCATCGGCCAGCTAACCGCCGTTGGAAEST: gi|162232654|gb|FC409205.1|FC409205
genomic: TGTCACAGTGGAACTGTTCTCGACTTGCCGTTTCTTTGCAGGTTCAATAGgtgagattat ... actgttgcagATACGGTCAATTTACGTGGGAGGATCATCGGCCAGCTAACCGCCGTTGGAA
EST: TGTCACAGTGGAACTGTTCTCGACTTGCCGTTTCTTTGCAGGTTCAATAG ATACGGTCAATTTACGTGGGAGGATCATCGGCCAGCTAACCGCCGTTGGAAEST: gi|37835112|gb|BJ593124.1|BJ593124
genomic: TGTCACAGTGGAACTGTTCTCGACTTGCCGTTTCTTTGCAGGTTCAATAGgtgagattat ... actgttgcagATACGGTCAATTTACGTGGGAGGATCATCGGCCAGCTAACCGCCGTTGGAA
EST: TGTCACAGTGGAACTGTTCTCGACTTGCCGTTTCTTTGCAGGTTCAATAG ATACGGTCAATTTACGTGGGAGGATCATCGGCCAGCTAACCGCCGTTGGAA
genomic: TGTCACAGTGGAACTGTTCTCGACTTGCCGTTTCTTTGCAGGTTCAATAGgtgagattat ... actgttgcagATACGGTCAATTTACGTGGGAGGATCATCGGCCAGCTAACCGCCGTTGGAA
ttagagattcgtactcggatctaggtaggaattcatatctaagtcactgttgcagATACGGTCAATTTACGTGGGAGGATCATCGGCCAGCTAACCGCCGTTGGAAAGGTACCAGTGGAGGACAAGCTTACTCTTTCAGTGGTTGTGACGACAGC
aattcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgatttacgccatctataagcctctgtttcatatgccctacacgttagagattcgtactcggatctaggtaggaattcatatctaagtcactgttgcagATACGGTCAATTTACGTGGGAGGATCATCGGCCAGCTAACCGCCGTTGGAAAGGTACCAGTGGAGGACAAGCTTACTCTTTCAGTGGTTGTGACGACAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT