Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacccacttttcaagtaatgcacttctattatgctctgataatatgatttacgatctcgtctctaaagacccaagtgagtcttggcacgagtaatatgtagttgtgtcaatgatgtcaagttaagagttaagaatggtattgttatagacaaattgcggaggctgatcactctttttattgtgattgtgcgtgcagCCCTCGTCCCATCAGTCGGGGTCATCTCGGCGATCATCTCTTCTTGCAGCAGAAGGTGAAGGTGAAGGCCACGTTGACGGTCAAG

Basic information

species Physcomitrella patens
transcript PP1S63_215V6.5
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67699477|gb|BJ959710.1|BJ959710
EST:     CAGGTCAGAAGCCGCGCAGCTTGATGGAGACATTGCGACCTAAGCTTCAG                         CCCTCGTCCCATCAGTCGGGGTCATCTCGGCGATCATCTCTTCTTGCAGCA
genomic: CAGGTCAGAAGCCGCGCAGCTTGATGGAGACATTGCGACCTAAGCTTCAGgtacccactt ... gtgcgtgcagCCCTCGTCCCATCAGTCGGGGTCATCTCGGCGATCATCTCTTCTTGCAGCA
EST: gi|18336957|gb|BJ168980.1|BJ168980
EST:     CAGGTCAGAAGCCGCGCAGCTTGATGGAGACATTGCGACCTAAGCTTCAG                         CCCTCGTCCCATCAGTCGGGGTCATCTCGGCGATCATCTCTTCTTGCAGCA
genomic: CAGGTCAGAAGCCGCGCAGCTTGATGGAGACATTGCGACCTAAGCTTCAGgtacccactt ... gtgcgtgcagCCCTCGTCCCATCAGTCGGGGTCATCTCGGCGATCATCTCTTCTTGCAGCA
EST: gi|162267090|gb|FC443321.1|FC443321
EST:     CAGGTCAGAAGCCGCGCAGCTTGATGGAGACATTGCGACCTAAGCTTCAG                         CCCTCGTCCCATCAGTCGGGGTCATCTCGGCGATCATCTCTTCTTGCAGCA
genomic: CAGGTCAGAAGCCGCGCAGCTTGATGGAGACATTGCGACCTAAGCTTCAGgtacccactt ... gtgcgtgcagCCCTCGTCCCATCAGTCGGGGTCATCTCGGCGATCATCTCTTCTTGCAGCA
EST: gi|162259557|gb|FC435484.1|FC435484
EST:     CAGGTCAGAAGCCGCGCAGCTTGATGGAGACATTGCGACCTAAGCTTCAG                         CCCTCGTCCCATCAGTCGGGGTCATCTCGGCGATCATCTCTTCTTGCAGCA
genomic: CAGGTCAGAAGCCGCGCAGCTTGATGGAGACATTGCGACCTAAGCTTCAGgtacccactt ... gtgcgtgcagCCCTCGTCCCATCAGTCGGGGTCATCTCGGCGATCATCTCTTCTTGCAGCA
EST: gi|162259556|gb|FC435483.1|FC435483
EST:     CAGGTCAGAAGCCGCGCAGCTTGATGGAGACATTGCGACCTAAGCTTCAG                         CCCTCGTCCCATCAGTCGGGGTCATCTCGGCGATCATCTCTTCTTGCAGCA
genomic: CAGGTCAGAAGCCGCGCAGCTTGATGGAGACATTGCGACCTAAGCTTCAGgtacccactt ... gtgcgtgcagCCCTCGTCCCATCAGTCGGGGTCATCTCGGCGATCATCTCTTCTTGCAGCA
EST: gi|18337165|gb|BJ169189.1|BJ169189
EST:     CAGGTCAGAAGCCGCGCAGCTTGATGGAGACATTGCGACCTAAGCTTCAG                         CCCTCGTCCCATCAGTCGGGGTCATCTCGGCGATCATCTCTTCTTGCAGCA
genomic: CAGGTCAGAAGCCGCGCAGCTTGATGGAGACATTGCGACCTAAGCTTCAGgtacccactt ... gtgcgtgcagCCCTCGTCCCATCAGTCGGGGTCATCTCGGCGATCATCTCTTCTTGCAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttatagacaaattgcggaggctgatcactctttttattgtgattgtgcgtgcagCCCTCGTCCCATCAGTCGGGGTCATCTCGGCGATCATCTCTTCTTGCAGCAGAAGGTGAAGGTGAAGGCCACGTTGACGGTCAAG
                   ggctgat  putative branch site (score: 4)
                               tttttattgtgatt  TA-rich tract