Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgcagttgttgaagcttcctcccttaagcattttactcatttaacttatctttcataccagtattcaaaactttatgaatgaccaccactttgtggagctttttcgagaatcaatttagtagctagtaatagttttccttgaatcctctgtaataacgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAGAAGCAGCTTATCCAGTTGCGTCTTAAGGCTGCCAAGAGTGTTGAGGAGC

Basic information

species Physcomitrella patens
transcript PP1S63_162V6.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S63_162V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: LOC_Os03g54890.3 (Oryza sativa), 3'ss of exon 2
gtgggtgcagttgttgaagcttcctcccttaagcattttactcatttaacttatctttcataccagtattcaaaactttatgaatgaccaccactttgtggagctttttcgagaatcaatttagtagctagtaatagttttccttgaatcctctgtaataacgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAGAAGCAGCTTATCCAGTTGCGTCTTAAGGCTGCCAAGAGTGTTGAGGAGC
                                                           ||   |||  |   |||||| | |       | |  || |  |  || | | |    |  || | | | | || ||  || ||  ||| | |  |||     | || | |||||||||||||||||||||||||  ||| |||||||   ||||||  | | |||||| ||     || ||||| | |||||||  |||   |  |||||| 
-----------------------------------------------------------atgttagttct---aactttgtcatctg--gctaagttatctaatttgtgctatg-cctgttgatttgatggtcat--ttctcactgatttcattgtt----caattttcagGAGCTTGAGGAGAAGAGGAAGGAGAAGGCCAAGGTTGCCTATGACAGGAGGAAGCAACTGGCGAAGCTGCGTGTCAAGGCTGAGAAGGCAGCCGAGGAGA

upper sequence: PP1S63_162V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: LOC_Os03g54890.2 (Oryza sativa), 3'ss of exon 3
gtgggtgcagttgttgaagcttcctcccttaagcattttactcatttaacttatctttcataccagtattcaaaactttatgaatgaccaccactttgtggagctttttcgagaatcaatttagtagctagtaatagttttccttgaatcctctgtaataacgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAGAAGCAGCTTATCCAGTTGCGTCTTAAGGCTGCCAAGAGTGTTGAGGAGC
                                                           ||   |||  |   |||||| | |       | |  || |  |  || | | |    |  || | | | | || ||  || ||  ||| | |  |||     | || | |||||||||||||||||||||||||  |||                                                                         
-----------------------------------------------------------atgttagttct---aactttgtcatctg--gctaagttatctaatttgtgctatg-cctgttgatttgatggtcat--ttctcactgatttcattgtt----caattttcagGAGCTTGAGGAGAAGAGGAAGGAGAAG-------------------------------------------------------------------------

upper sequence: PP1S63_162V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GRMZM2G072315_T01 (Zea mays), 3'ss of exon 3
gtgggtgcagttgttgaagcttcctcccttaagcattttactcatttaacttatctttcataccagtattcaaaactttatgaatgaccaccactttgtggagctttttcgagaatcaatttagtagctagtaatagttttccttgaatcctctgtaataacgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAGAAGCAGCTTATCCAGTTGCGTCTTAAGGCTGCCAAGAGTGTTGAGGAGC
                                                         |   |  |||     |   || |||  ||        |   | ||  ||| ||  |   |    | ||| ||    ||   | |  ||   | |||| |            |||||||||||||||||||||||||  ||| ||||||||  ||||||  | | |||||||||   | || |||| || |||||||     |  |  |||||| 
--------------------------------------------------------attgcaggagttgctgatgtttaatggctgtgttattttccattgaaatttatcctgctgcgtcctggtatctg---attcctattgtttggtgctctat------------cagGAGCTTGAGGAGAAGAGGAAGGAGAAGGCCAAGGTGGCCTATGAGAGGAGGAAGCAGCTGGCCAAGCTGCGCCTAAAGGCTGAGGCTACAGCCGAGGAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162244373|gb|FC421025.1|FC421025
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|162205282|gb|FC380964.1|FC380964
EST:     TGGGCCGTTTGTCAGAAGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|208366844|gb|DC940158.1|DC940158
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|162225076|gb|FC401700.1|FC401700
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|162225077|gb|FC401701.1|FC401701
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|162209015|gb|FC385567.1|FC385567
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|67728015|gb|BJ978274.1|BJ978274
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|13251560|gb|BG362463.1|BG362463
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|162209016|gb|FC385568.1|FC385568
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|100368987|gb|BY984971.1|BY984971
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|162207199|gb|FC382521.1|FC382521
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|162225768|gb|FC400708.1|FC400708
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|162227046|gb|FC403377.1|FC403377
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTTCGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTTTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|37821181|gb|BJ579247.1|BJ579247
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|208370695|gb|DC936845.1|DC936845
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|67726636|gb|BJ976895.1|BJ976895
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|162227047|gb|FC403378.1|FC403378
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|162242094|gb|FC419428.1|FC419428
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|6167504|gb|AW145768.1|AW145768
EST:     CCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTACAAGGTGTGCTATGAACGCAAG
genomic: CCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|100442597|gb|BY963291.1|BY963291
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|162205281|gb|FC380963.1|FC380963
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|67694236|gb|BJ954469.1|BJ954469
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|162211930|gb|FC387802.1|FC387802
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|67718147|gb|BJ968406.1|BJ968406
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|162220991|gb|FC396176.1|FC396176
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|162220990|gb|FC396175.1|FC396175
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|162242093|gb|FC419427.1|FC419427
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|67719750|gb|BJ970009.1|BJ970009
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|162211929|gb|FC387801.1|FC387801
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|37847760|gb|BJ605768.1|BJ605768
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|208394042|gb|DC957123.1|DC957123
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|162225769|gb|FC400709.1|FC400709
EST:     TGGGCCGATTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
EST: gi|15261557|gb|BI436867.1|BI436867
EST:     TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAG                         GAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG
genomic: TGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 121

AGTATTGAGACTGCAACCTGGACACAAATTCTGTTTGTTGGGCCGTTTGTCAGAGGAGGTCGGGTGGCACCATTACGACACGATCAAGgtgggtgcag ... cgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAGAAGCAGCTTATCCAGTTGCGTCTTAAGGCTGCCAAGAGTGTTGAGGAGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatttagtagctagtaatagttttccttgaatcctctgtaataacgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAGAAGCAGCTTATCCAGTTGCGTCTTAAGGCTGCCAAGAGTGTTGAGGAGC
                                       taataac  putative branch site (score: 121)
               taatagtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgggtgcagttgttgaagcttcctcccttaagcattttactcatttaacttatctttcataccagtattcaaaactttatgaatgaccaccactttgtggagctttttcgagaatcaatttagtagctagtaatagttttccttgaatcctctgtaataacgatgtgcagGAGCTTGAGGAGAAGAGGAAGGCCAAGTCCAAGGTGTTCTATGAACGCAAGAAGCAGCTTATCCAGTTGCGTCTTAAGGCTGCCAAGAGTGTTGAGGAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG