1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttagcccgaaattttgttatagatatggcttatgtttagtcgtgtcaatttagagtccttctgacaggcagttttgtgaatctgcgggtggtggtctcagCAACAGCCAGCCTCTTGGATGAATCAAAAACATCGTGGAGTTGAACTCAATATGAATGAAA
species | Physcomitrella patens |
transcript | PP1S62_239V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCAGCACCTTGCTCCTAGGATTGGAAACGGAACGCCAAGTTCATACATG CAACAGCCAGCCTCTTGGATGAATCAAAAACATCGTGGAGTTGAACTCAATEST: gi|161970310|gb|EE296263.1|EE296263
genomic: AGCAGCACCTTGCTCCTAGGATTGGAAACGGAACGCCAAGTTCATACATGgtacgttgta ... gtggtctcagCAACAGCCAGCCTCTTGGATGAATCAAAAACATCGTGGAGTTGAACTCAAT
EST: AGCAGCACCTTGCTCCTAGGATTGGAAACGGAACGCCAAGTTCATACATG CAACAGCCAGCCTCTTGGATGAATCAAAAACATCGTGGAGTTGAACTCAATEST: gi|162272700|gb|FC448326.1|FC448326
genomic: AGCAGCACCTTGCTCCTAGGATTGGAAACGGAACGCCAAGTTCATACATGgtacgttgta ... gtggtctcagCAACAGCCAGCCTCTTGGATGAATCAAAAACATCGTGGAGTTGAACTCAAT
EST: AGCAGCACCTTGCTCCTAGGATTGGAAACGGAACGCCAAGTTCATACATG CAACAGCCAGCCTCTTGGATGAATCAAAA-CATCGEST: gi|162211735|gb|FC387399.1|FC387399
genomic: AGCAGCACCTTGCTCCTAGGATTGGAAACGGAACGCCAAGTTCATACATGgtacgttgta ... gtggtctcagCAACAGCCAGCCTCTTGGATGAATCAAAAACATCG
EST: AGCAGCACCTTGCTCCTAGGATTGGAAACGGAACGCCAAGTTCATACATG CAACAGCCAGCCTCTTGGATGAATCAAAAACATCGTGGAGTTGAACTCAATEST: gi|162169515|gb|FC346079.1|FC346079
genomic: AGCAGCACCTTGCTCCTAGGATTGGAAACGGAACGCCAAGTTCATACATGgtacgttgta ... gtggtctcagCAACAGCCAGCCTCTTGGATGAATCAAAAACATCGTGGAGTTGAACTCAAT
EST: AGCAGCACCTTGCTCCTAGGATTGGAAACGGAACGCCAAGTTCATACATG CAACAGCCAGCCTCTTGGATGAATCAAAAACATCGTGGAGTTGAACTCAAT
genomic: AGCAGCACCTTGCTCCTAGGATTGGAAACGGAACGCCAAGTTCATACATGgtacgttgta ... gtggtctcagCAACAGCCAGCCTCTTGGATGAATCAAAAACATCGTGGAGTTGAACTCAAT
caatttagagtccttctgacaggcagttttgtgaatctgcgggtggtggtctcagCAACAGCCAGCCTCTTGGATGAATCAAAAACATCGTGGAGTTGAACTCAATATGAATGAAA
ttctgac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagcccgaaattttgttatagatatggcttatgtttagtcgtgtcaatttagagtccttctgacaggcagttttgtgaatctgcgggtggtggtctcagCAACAGCCAGCCTCTTGGATGAATCAAAAACATCGTGGAGTTGAACTCAATATGAATGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG