1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gcttgttgggactttattcattgtttaattaggatgtgtttgtgttctgcacaagtaaagccctgctgacatttgacctggattaatcttgtctgtgtagAATTATATTGGAGACGGATGCGAATGTTATTGCTAGCAGAGTGGCGATGCGGGGTGCTAATGATGACGTACCCCTATCAGAGCAG
species | Physcomitrella patens |
transcript | PP1S56_263V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGAATTTTGATCTTGTTCTCCTTTGTCTCGATGAGATTGTGGATGGCGG AATTATATTGGAGACGGATGCGAATGTTATTGCTAGCAGAGTGGCGATGCGEST: gi|18359929|gb|BJ191990.1|BJ191990
genomic: GAGAATTTTGATCTTGTTCTCCTTTGTCTCGATGAGATTGTGGATGGCGGgtacagtact ... gtctgtgtagAATTATATTGGAGACGGATGCGAATGTTATTGCTAGCAGAGTGGCGATGCG
EST: GAGAATTTTGATCTTGTTCTCCTTTGTCTCGATGAGATTGTGGATGGCGG AATTATATTGGAGACGGATGCGAATGTTATTGCTAEST: gi|67508098|gb|BJ940969.1|BJ940969
genomic: GAGAATTTTGATCTTGTTCTCCTTTGTCTCGATGAGATTGTGGATGGCGGgtacagtact ... gtctgtgtagAATTATATTGGAGACGGATGCGAATGTTATTGCTA
EST: GAGAATTTTGATCTTGTTCTCCTTTGTCTCGATGAGATTGTGGATGGCGG AATTATATTGGAGACGGATGCGAATGTTATTGCTAGCAGAGTGGCGATGCGEST: gi|162214885|gb|FC391020.1|FC391020
genomic: GAGAATTTTGATCTTGTTCTCCTTTGTCTCGATGAGATTGTGGATGGCGGgtacagtact ... gtctgtgtagAATTATATTGGAGACGGATGCGAATGTTATTGCTAGCAGAGTGGCGATGCG
EST: GAGAATTTTGATCTTGTTCTCCTTTGTCTCGATGAGATTGTGGATGGCGG AATTATATTGGAGACGGATGCGAATGTTATTGCTAGCAGAGTGGCGATGCGEST: gi|37853329|gb|BJ611337.1|BJ611337
genomic: GAGAATTTTGATCTTGTTCTCCTTTGTCTCGATGAGATTGTGGATGGCGGgtacagtact ... gtctgtgtagAATTATATTGGAGACGGATGCGAATGTTATTGCTAGCAGAGTGGCGATGCG
EST: GAGAATTTTGATCTTGTTCTCCTTTGTCTCGATGAGATTGTGGATGGCGG AATTATATTGGAGACGGATGCGAATGTTATTGCTAGCAGAGTGGCGATGCG
genomic: GAGAATTTTGATCTTGTTCTCCTTTGTCTCGATGAGATTGTGGATGGCGGgtacagtact ... gtctgtgtagAATTATATTGGAGACGGATGCGAATGTTATTGCTAGCAGAGTGGCGATGCG
tctgcacaagtaaagccctgctgacatttgacctggattaatcttgtctgtgtagAATTATATTGGAGACGGATGCGAATGTTATTGCTAGCAGAGTGGCGATGCGGGGTGCTAATGATGACGTACCCCTATCAGAGCAG
tcttgtct CT-rich tract
attaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttgttgggactttattcattgtttaattaggatgtgtttgtgttctgcacaagtaaagccctgctgacatttgacctggattaatcttgtctgtgtagAATTATATTGGAGACGGATGCGAATGTTATTGCTAGCAGAGTGGCGATGCGGGGTGCTAATGATGACGTACCCCTATCAGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - ttctgca