1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgtgcttccactccatgttgtgaaagtttctgtgcgctgcgttggggttgctttcagttcaaagaactcgttgatttcttttttgtgacttgtgctgaaatgaccagaccaaggttcacttatgtaatcccttattcttatgcgtatagGAGCGTGATCCCATTGAAAGGATAAGGAAGCTGCTGGTGACTCATGAGCTTGCTTCGGTTGCGGATCTGAAG
species | Physcomitrella patens |
transcript | PP1S56_222V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCGGTGTCCGACAG GAGCGTGATCCCATTGAAAGGATAAGGAAGCTGCTGGTGACTCATGAGCTTEST: gi|67697180|gb|BJ957413.1|BJ957413
genomic: TCCGGTGTCCGACAGgtgtgcttcc ... atgcgtatagGAGCGTGATCCCATTGAAAGGATAAGGAAGCTGCTGGTGACTCATGAGCTT
EST: ACCCAGGCAGCACCTATCGAACTCGTGACGAGATCTCCGGTGTCCGACAG GAGCGTGATCCCATTGAAAGGATAAGGAAGCTGCTGGTGACTCATGAGCTTEST: gi|162269474|gb|FC445342.1|FC445342
genomic: ACCCAGGCAGCACCTATCGAACTCGTGACGAGATCTCCGGTGTCCGACAGgtgtgcttcc ... atgcgtatagGAGCGTGATCCCATTGAAAGGATAAGGAAGCTGCTGGTGACTCATGAGCTT
EST: ACCCAGGCAGCACCTATCGAACTCGTGACGAGATCTCCGGTGTCCGACAG GAGCGTGATCCCATTGAAAGGATAAGGAAGCTGCTGGTGACTCATGAGCTTEST: gi|208344991|gb|DC925401.1|DC925401
genomic: ACCCAGGCAGCACCTATCGAACTCGTGACGAGATCTCCGGTGTCCGACAGgtgtgcttcc ... atgcgtatagGAGCGTGATCCCATTGAAAGGATAAGGAAGCTGCTGGTGACTCATGAGCTT
EST: ACCCAGGCAGCACCTATCGAACTCGTGACGAGATCTCCGGTGTCCGACAG GAGCGTGATCCCATTGAAAGGATAAGGAAGCTGCTGGTGACTCATGAGCTTEST: gi|162269475|gb|FC445343.1|FC445343
genomic: ACCCAGGCAGCACCTATCGAACTCGTGACGAGATCTCCGGTGTCCGACAGgtgtgcttcc ... atgcgtatagGAGCGTGATCCCATTGAAAGGATAAGGAAGCTGCTGGTGACTCATGAGCTT
EST: ACCCAGGCAGCACCTATCGAACTCGTGACGAGATCTCCGGTGTCCGACAG GAGCGTGATCC
genomic: ACCCAGGCAGCACCTATCGAACTCGTGACGAGATCTCCGGTGTCCGACAGgtgtgcttcc ... atgcgtatagGAGCGTGATCC
ctgaaatgaccagaccaaggttcacttatgtaatcccttattcttatgcgtatagGAGCGTGATCCCATTGAAAGGATAAGGAAGCTGCTGGTGACTCATGAGCTTGCTTCGGTTGCGGATCTGAAG
tcccttattcttat CT-rich tract
ttattcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgcttccactccatgttgtgaaagtttctgtgcgctgcgttggggttgctttcagttcaaagaactcgttgatttcttttttgtgacttgtgctgaaatgaccagaccaaggttcacttatgtaatcccttattcttatgcgtatagGAGCGTGATCCCATTGAAAGGATAAGGAAGCTGCTGGTGACTCATGAGCTTGCTTCGGTTGCGGATCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG