1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtacagaattggttttttttgagaggttcgtgttgcataagagtaccgcttttaaattagagagctgattcgaagttggtttcaaatgcggtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTTCAAGAGCGGTCAAACGAAGATGAAATCCGTTCTAGTGGACTTTCTAGT
species | Physcomitrella patens |
transcript | PP1S55_204V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTEST: gi|162247857|gb|FC420616.1|FC420616
genomic: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
EST: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTEST: gi|162194434|gb|FC368539.1|FC368539
genomic: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
EST: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTEST: gi|162165316|gb|FC340817.1|FC340817
genomic: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
EST: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTEST: gi|162191433|gb|FC368190.1|FC368190
genomic: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
EST: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTEST: gi|162186353|gb|FC361661.1|FC361661
genomic: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
EST: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTEST: gi|162194084|gb|FC370259.1|FC370259
genomic: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
EST: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTEST: gi|162184403|gb|FC359149.1|FC359149
genomic: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
EST: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTEST: gi|162182475|gb|FC357450.1|FC357450
genomic: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
EST: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTEST: gi|162175808|gb|FC352110.1|FC352110
genomic: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
EST: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTEST: gi|162184271|gb|FC359693.1|FC359693
genomic: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
EST: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTEST: gi|162220955|gb|FC396140.1|FC396140
genomic: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
EST: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTEST: gi|162151547|gb|FC327260.1|FC327260
genomic: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
EST: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTEST: gi|162268155|gb|FC443833.1|FC443833
genomic: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
EST: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTEST: gi|162213492|gb|FC389364.1|FC389364
genomic: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
EST: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTEST: gi|162156175|gb|FC332550.1|FC332550
genomic: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
EST: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTEST: gi|162197484|gb|FC372862.1|FC372862
genomic: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
EST: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTEST: gi|162182387|gb|FC357986.1|FC357986
genomic: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
EST: CCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTEST: gi|162194175|gb|FC369687.1|FC369687
genomic: CCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
EST: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTEST: gi|162198718|gb|FC373486.1|FC373486
genomic: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
EST: AGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTEST: gi|162246259|gb|FC421966.1|FC421966
genomic: AGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
EST: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTEST: gi|162222899|gb|FC399361.1|FC399361
genomic: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
EST: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGEST: gi|162218352|gb|FC394526.1|FC394526
genomic: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTG
EST: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTG GAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
genomic: CGAGCAGGTTCCCTTCATCAACGGCAGTCCCCAGAACACATTCGTCCCTGgtgaagatcg ... gtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACT
ccgcttttaaattagagagctgattcgaagttggtttcaaatgcggtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTTCAAGAGCGGTCAAACGAAGATGAAATCCGTTCTAGTGGACTTTCTAGT
agctgat putative branch site (score: 4)
tttaaattaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagaattggttttttttgagaggttcgtgttgcataagagtaccgcttttaaattagagagctgattcgaagttggtttcaaatgcggtggttgcagGAGTAATTGAATACGCTGTTGAAAAGAACTCATTAATTGGTGGTGACGACTTCAAGAGCGGTCAAACGAAGATGAAATCCGTTCTAGTGGACTTTCTAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - tgttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaatgc