Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaacacatccatttatgcggtcatccaatcactcctctccttgatgtagatttggttctcttttttgacaattttggtaatatggttttgatttttgacatgtacagAGTTTTAATCCTGGTGATCTTCGCAATGTAGCTGGTATACAATTGACTGCTGGGGTTTCTGTTGCGCTGGTGCTTTCAGCGGCTTTTAACGATATTGATT

Basic information

species Physcomitrella patens
transcript PP1S55_203V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162180379|gb|FC355800.1|FC355800
EST:     GTGTAGGCTCGGCTATTCTCTCAATCAGTCTTCTCTTGTGCACGCTAGTG                         AGTTTTAATCCTGGTGATCTTCGCAATGTAGCTGGTATACAATTGACTGCT
genomic: GTGTAGGCTCGGCTATTCTCTCAATCAGTCTTCTCTTGTGCACGCTAGTGgtaagtcaac ... acatgtacagAGTTTTAATCCTGGTGATCTTCGCAATGTAGCTGGTATACAATTGACTGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttctcttttttgacaattttggtaatatggttttgatttttgacatgtacagAGTTTTAATCCTGGTGATCTTCGCAATGTAGCTGGTATACAATTGACTGCTGGGGTTTCTGTTGCGCTGGTGCTTTCAGCGGCTTTTAACGATATTGATT
                                        ttttgac  putative branch site (score: 3)
        ttttttgacaatttt  TA-rich tract