1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtaccctaccctttatcatacttagaaacagtccactgctttgctctacaatcaacttttttgtcgattattgagatggtcatttgcaaacaaattgtgggtcatgagtgtgtatttgggacgtgctaatttacattcggcttgaatctatgtgagcttatagGAAATGCGTTATTCCAATGGGTGGTGTGTTGCCTGTCATCCCACAAAGAGTGCTTGGTATTGGTGGAACCGCAGGCATGGTTCATCCATCAACTG
species | Physcomitrella patens |
transcript | PP1S55_202V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGCGACTCAAACACTTAGGCATCCATGTTCGTAGCATTGAGGAAGATGA GAAATGCGTTATTCCAATGGGTGGTGTGTTGCCTGTCATCCEST: gi|162149863|gb|FC326186.1|FC326186
genomic: TTGCGACTCAAACACTTAGGCATCCATGTTCGTAGCATTGAGGAAGATGAgtgagtaccc ... gagcttatagGAAATGCGTTATTCCAATGGGTGGTGTGTTGCCTGTCATCC
EST: TTGCGACTCAAACACTTAGGCATCCATGTTCGTAGCATTGAGGAAGATGA GAAATGCGTTATTCCAATGGGTGGTGTGTTGCCTGTCATCCCACAAAGAGTEST: gi|162193792|gb|FC368706.1|FC368706
genomic: TTGCGACTCAAACACTTAGGCATCCATGTTCGTAGCATTGAGGAAGATGAgtgagtaccc ... gagcttatagGAAATGCGTTATTCCAATGGGTGGTGTGTTGCCTGTCATCCCACAAAGAGT
EST: TTGCGACTCAAACACTTAGGCATCCATGTTCGTAGCATTGAGGAAGATGA GAAATGCGTTATTCCAATGGGTGGTGTGTTGCCTGTCATCCCACAAAGAGTEST: gi|162158482|gb|FC334485.1|FC334485
genomic: TTGCGACTCAAACACTTAGGCATCCATGTTCGTAGCATTGAGGAAGATGAgtgagtaccc ... gagcttatagGAAATGCGTTATTCCAATGGGTGGTGTGTTGCCTGTCATCCCACAAAGAGT
EST: TTGCGACTCAAACACTTAGGCATCCATGTTCGTAGCATTGAGGAAGATGA GAAATGCGTTATTCCAATGGGTGGTGTGTTGCCTGTCATCCCACAAAGAGT
genomic: TTGCGACTCAAACACTTAGGCATCCATGTTCGTAGCATTGAGGAAGATGAgtgagtaccc ... gagcttatagGAAATGCGTTATTCCAATGGGTGGTGTGTTGCCTGTCATCCCACAAAGAGT
tgtgtatttgggacgtgctaatttacattcggcttgaatctatgtgagcttatagGAAATGCGTTATTCCAATGGGTGGTGTGTTGCCTGTCATCCCACAAAGAGTGCTTGGTATTGGTGGAACCGCAGGCATGGTTCATCCATCAACTG
tgctaat putative branch site (score: 15)
taatttacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaccctaccctttatcatacttagaaacagtccactgctttgctctacaatcaacttttttgtcgattattgagatggtcatttgcaaacaaattgtgggtcatgagtgtgtatttgggacgtgctaatttacattcggcttgaatctatgtgagcttatagGAAATGCGTTATTCCAATGGGTGGTGTGTTGCCTGTCATCCCACAAAGAGTGCTTGGTATTGGTGGAACCGCAGGCATGGTTCATCCATCAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA