1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgcattctcaaagctgttggttgctagaaatttgaagtatagtaatgttcatattggcttgcgttgacattcaatagggtatgttctgttggctttccagAGGAAACATCATTGGTGGCACGGCCAGGCGTACCAATGGATGTCATTCAAAAACGCATGGAGTTGCGACTCAAACACTTAGGCATCCATGTTCGTAGCAT
species | Physcomitrella patens |
transcript | PP1S55_202V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCGACTTTCCTGTATGCGATGCCATTTTCAGCCAACCACATATTTCTAG AGGAAACATCATTGGTGGCACGGCCAGGCGTACCAATGGATGTCATTCAAAEST: gi|162149863|gb|FC326186.1|FC326186
genomic: ACCGACTTTCCTGTATGCGATGCCATTTTCAGCCAACCACATATTTCTAGgtcagttatc ... ggctttccagAGGAAACATCATTGGTGGCACGGCCAGGCGTACCAATGGATGTCATTCAAA
EST: ACCGACTTTCCTGTATGCGATGCCATTTTCAGCCAACCACATATTTCTAG AGGAAACATCATTGGTGGCACGGCCAGGCGTACCAATGGATGTCATTCAAAEST: gi|162193792|gb|FC368706.1|FC368706
genomic: ACCGACTTTCCTGTATGCGATGCCATTTTCAGCCAACCACATATTTCTAGgtcagttatc ... ggctttccagAGGAAACATCATTGGTGGCACGGCCAGGCGTACCAATGGATGTCATTCAAA
EST: ACCGACTTTCCTGTATGCGATGCCATTTTCAGCCAACCACATATTTCTAG AGGAAACATCATTGGTGGCACGGCCAGGCGTACCAATGGATGTCATTCAAAEST: gi|162158482|gb|FC334485.1|FC334485
genomic: ACCGACTTTCCTGTATGCGATGCCATTTTCAGCCAACCACATATTTCTAGgtcagttatc ... ggctttccagAGGAAACATCATTGGTGGCACGGCCAGGCGTACCAATGGATGTCATTCAAA
EST: ACCGACTTTCCTGTATGCGATGCCATTTTCAGCCAACCACATATTTCTAG AGGAAACATCATTGGTGGCACGGCCAGGCGTACCAATGGATGTCATTCAAAEST: gi|162252108|gb|FC428347.1|FC428347
genomic: ACCGACTTTCCTGTATGCGATGCCATTTTCAGCCAACCACATATTTCTAGgtcagttatc ... ggctttccagAGGAAACATCATTGGTGGCACGGCCAGGCGTACCAATGGATGTCATTCAAA
EST: ACCGACTTTCCTGTATGCGATGCCATTTTCAGCCAACCACATATTTCTAG AGGAAACATCATTGGTGGCACGGCCAGGCGTACCAATGGATGTCATTCAAA
genomic: ACCGACTTTCCTGTATGCGATGCCATTTTCAGCCAACCACATATTTCTAGgtcagttatc ... ggctttccagAGGAAACATCATTGGTGGCACGGCCAGGCGTACCAATGGATGTCATTCAAA
tgttcatattggcttgcgttgacattcaatagggtatgttctgttggctttccagAGGAAACATCATTGGTGGCACGGCCAGGCGTACCAATGGATGTCATTCAAAAACGCATGGAGTTGCGACTCAAACACTTAGGCATCCATGTTCGTAGCAT
cgttgac putative branch site (score: 4)
ctttcc putative PPT
attcaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcattctcaaagctgttggttgctagaaatttgaagtatagtaatgttcatattggcttgcgttgacattcaatagggtatgttctgttggctttccagAGGAAACATCATTGGTGGCACGGCCAGGCGTACCAATGGATGTCATTCAAAAACGCATGGAGTTGCGACTCAAACACTTAGGCATCCATGTTCGTAGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA