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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattcattagttatgctcaccagttttcaagctagatagttgcgctttatgtagtatgcgggtttgtcaaggatcataataataatctggtttagctctaatttgtttaagatttttatatttttctgaaatatcgtttcgtcatgcatgcagTCCTACTGCATACAGGATACTACTCATCTTCACCTGTTCTACCTCCAAATTCAACATTAGAACTGCGGGCCACCATTCGTATTCTTGAATCTCAAAATA

Basic information

species Physcomitrella patens
transcript PP1S55_201V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162279404|gb|FC455520.1|FC455520
EST:     TCAACTATGGGGAACAGACATATATACAGATGACTCAGACATTGTTGCAG                         TCCTACTGCATACAGGATACTACTCATCTTCACCTGTTCTACCTCCAAATT
genomic: TCAACTATGGGGAACAGACATATATACAGATGACTCAGACATTGTTGCAGgtatattcat ... atgcatgcagTCCTACTGCATACAGGATACTACTCATCTTCACCTGTTCTACCTCCAAATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatttgtttaagatttttatatttttctgaaatatcgtttcgtcatgcatgcagTCCTACTGCATACAGGATACTACTCATCTTCACCTGTTCTACCTCCAAATTCAACATTAGAACTGCGGGCCACCATTCGTATTCTTGAATCTCAAAATA
 ctctaat  putative branch site (score: 3)
       tttaagatttttatat  TA-rich tract