1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgaagatccacattcactcgaacattggctttcattagcttctgcataacatttgagaacggtatgttggacatttggcattgacagcgtgatgcatgacctttttgtgggttacgcagAATTGCCATCTGCACTCGGAGGCGAAGGTCTTCGGTTCCGTGACGGCTCAGAAAAGGAACGAGAGCCACATGAACACGGGATTCTCTTTCGTGGATGCAT
species | Physcomitrella patens |
transcript | PP1S55_167V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGCAATGGCCGAAGTTTGTACAAG AATTGCCATCTGCACTCGGAGGCGAAGGTCTTCGGTTCCGTGACGGCTCAGEST: gi|208392948|gb|DC928634.1|DC928634
genomic: GGCAATGGCCGAAGTTTGTACAAGgtgaagatcc ... ggttacgcagAATTGCCATCTGCACTCGGAGGCGAAGGTCTTCGGTTCCGTGACGGCTCAG
EST: TCCAAGGCTCCATCGACTTTGTTTTCGGCAATGGCCGAAGTTTGTACAAG AATTGCCATCTGCACTCGGAGGCGAAGGTCTTCGGTTCCGTGACGGCTCAGEST: gi|100428241|gb|BY977704.1|BY977704
genomic: TCCAAGGCTCCATCGACTTTGTTTTCGGCAATGGCCGAAGTTTGTACAAGgtgaagatcc ... ggttacgcagAATTGCCATCTGCACTCGGAGGCGAAGGTCTTCGGTTCCGTGACGGCTCAG
EST: TCCAAGGCTCCATCGACTTTGTTTTCGGCAATGGCCGAAGTTTGTACAAG AATTGCCATCTGCACTCGGAGGCGAAGGTCTTCGGTTCCGTGACGGCTCAGEST: gi|100445957|gb|CJ970256.1|CJ970256
genomic: TCCAAGGCTCCATCGACTTTGTTTTCGGCAATGGCCGAAGTTTGTACAAGgtgaagatcc ... ggttacgcagAATTGCCATCTGCACTCGGAGGCGAAGGTCTTCGGTTCCGTGACGGCTCAG
EST: TCCAAGGCTCCATCGACTTTGTTTTCGGCAATGGCCGAAGTTTGTACAAG AATTGCCATCTGCACTCGGAGGCGAAGGTCTTCGGTTCCGTGACGGCTCANEST: gi|208381164|gb|DC923729.1|DC923729
genomic: TCCAAGGCTCCATCGACTTTGTTTTCGGCAATGGCCGAAGTTTGTACAAGgtgaagatcc ... ggttacgcagAATTGCCATCTGCACTCGGAGGCGAAGGTCTTCGGTTCCGTGACGGCTCAG
EST: AATGGCCGAAGTTTGTACAAG AATTGCCATCTGCACTCGGAGGCGAAGGTCTTCGGTTCCGTGACGGCTCAGEST: gi|208380688|gb|DC919418.1|DC919418
genomic: AATGGCCGAAGTTTGTACAAGgtgaagatcc ... ggttacgcagAATTGCCATCTGCACTCGGAGGCGAAGGTCTTCGGTTCCGTGACGGCTCAG
EST: ATCGACTTTGTTTTCGGCAATGGCCGAAGTTTGTACAAG AATTGCCATCTGCACTCGGAGGCGAAGGTCTTCGGTTCCGTGACGGCTCAGEST: gi|208381526|gb|DC923112.1|DC923112
genomic: ATCGACTTTGTTTTCGGCAATGGCCGAAGTTTGTACAAGgtgaagatcc ... ggttacgcagAATTGCCATCTGCACTCGGAGGCGAAGGTCTTCGGTTCCGTGACGGCTCAG
EST: CGAAGTTTGTACAAG AATTGCCATNTGCACTCGGAGGCGAAGGTCTTCGGTTCCGTGACGGCTCAGEST: gi|208356793|gb|DC926804.1|DC926804
genomic: CGAAGTTTGTACAAGgtgaagatcc ... ggttacgcagAATTGCCATCTGCACTCGGAGGCGAAGGTCTTCGGTTCCGTGACGGCTCAG
EST: TCCAAGGCTCCATCGACTTTGTTTTCGGCAATGGCCGAAGTTTGTACAAG AATTGCCATCTGCACTCGGAGGCGAAGGTCTTCGGTTCCGTGACGGCTCAG
genomic: TCCAAGGCTCCATCGACTTTGTTTTCGGCAATGGCCGAAGTTTGTACAAGgtgaagatcc ... ggttacgcagAATTGCCATCTGCACTCGGAGGCGAAGGTCTTCGGTTCCGTGACGGCTCAG
tgttggacatttggcattgacagcgtgatgcatgacctttttgtgggttacgcagAATTGCCATCTGCACTCGGAGGCGAAGGTCTTCGGTTCCGTGACGGCTCAGAAAAGGAACGAGAGCCACATGAACACGGGATTCTCTTTCGTGGATGCAT
cattgac putative branch site (score: 10)
tttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaagatccacattcactcgaacattggctttcattagcttctgcataacatttgagaacggtatgttggacatttggcattgacagcgtgatgcatgacctttttgtgggttacgcagAATTGCCATCTGCACTCGGAGGCGAAGGTCTTCGGTTCCGTGACGGCTCAGAAAAGGAACGAGAGCCACATGAACACGGGATTCTCTTTCGTGGATGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA