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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatactccaggttactgtgagtttgtaaattggctaattttgaagtgagaagcgacttgaagaagctgaatctatgtttaaatttaaattttagttatttattatttggttctccttgtgtttagATTTATCAGCACCAGCATAGCAAGCAGATGAGCTGTCCAGCAATGGCGCAGCTACTTTCAAATACTTTATATTACAAGCGATTTTTTCCGTACTATTCAT

Basic information

species Physcomitrella patens
transcript PP1S54_196V6.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S54_196V6.2 (Physcomitrella patens), 3'ss of exon 4
lower sequence: AT3G60820.1 (Arabidopsis thaliana), 3'ss of exon 3
gtacatactccaggttactgtgagtttgtaaattggctaattttgaagtgagaagcgacttgaagaagctgaatctatgtttaaatttaaattttagttatttattatttggttctccttgtgtttagATTTATCAGCACCAGCATAGCAAGCAGATGAGCTGTCCAGCAATGGCGCAGCTACTTTCAAATACTTTATATTACAAGCGATTTTTTCCGTACTATTCAT
           || | |   |  ||   |  ||    ||  ||| |           | | ||| | | ||||   |   ||   |   | | ||  || | | |  |||||||  |      || |||| ||||| || ||||||| |||||||||||||||||| |||||||| ||||| || || || ||  | |||| |||||| ||||| || |||||| | |
--------gtgagttaaactttggtcgtttgatcaattatctttcatccttcgcagtattagaaaatgatgaa---agacttgtgtaagagtgtt--ttctctgt-gtttggtttcc------ttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAGCTTCTCTCCAACACGCTTTATTTCAAGCGGTTTTTCCCCTACTATGCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100435783|gb|BY961088.1|BY961088
EST:     TCAAGCAGATGTCAGATCGCTCCNNNNNNNNTTTAGATGCTCGGCATCAG                         ATTTATCAGCACCAGCATAGCAAGCAGATGAGCTGTCCAGCAATGGCGCAG
genomic: TCAAGCAGATGTCAGATCGCTCCAAAAAAA-TTTAGATGCTCGGCATCAGgtacatactc ... ttgtgtttagATTTATCAGCACCAGCATAGCAAGCAGATGAGCTGTCCAGCAATGGCGCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatgtttaaatttaaattttagttatttattatttggttctccttgtgtttagATTTATCAGCACCAGCATAGCAAGCAGATGAGCTGTCCAGCAATGGCGCAGCTACTTTCAAATACTTTATATTACAAGCGATTTTTTCCGTACTATTCAT
                                       ttctccttgtgttt  CT-rich tract
      tttaaatttaaatttt  TA-rich tract