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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagacgtctttcctatcccagttatttttgatgaagtgctttgttggctgcccctccttttcggaaagtttaagttgtttgcatatccagggcatatacctgcaattggcgcttccattttagattgtgatttcggatgttcgaaaagcactttcagtttactaatatggcatgttgcgctttgcagACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTTTCTGGATTAGGTGCTGGCTTTATCGCTGTCTGTGTGGGCTCTCCTGTTG

Basic information

species Physcomitrella patens
transcript PP1S54_186V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208374000|gb|DC944733.1|DC944733
EST:     ACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAG                         ACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTT
genomic: ACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAGgtgagacgtc ... cgctttgcagACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTT
EST: gi|208372592|gb|DC944599.1|DC944599
EST:     ACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAG                         ACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTT
genomic: ACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAGgtgagacgtc ... cgctttgcagACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTT
EST: gi|162230432|gb|FC407087.1|FC407087
EST:     ACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAG                         ACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTT
genomic: ACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAGgtgagacgtc ... cgctttgcagACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTT
EST: gi|162158108|gb|FC333903.1|FC333903
EST:     ACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAG                         ACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTT
genomic: ACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAGgtgagacgtc ... cgctttgcagACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTT
EST: gi|162272364|gb|FC449029.1|FC449029
EST:     ACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAG                         ACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTT
genomic: ACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAGgtgagacgtc ... cgctttgcagACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcggatgttcgaaaagcactttcagtttactaatatggcatgttgcgctttgcagACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTTTCTGGATTAGGTGCTGGCTTTATCGCTGTCTGTGTGGGCTCTCCTGTTG
                           tactaat  putative branch site (score: 1)
                         tttactaatat  TA-rich tract