1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaacaggagttatatttaccttttatgcaggtttttgtacacgtcgtaatgagcgcatacacattgttttatcatccggatttgcgagtcttggcgacctggaaatgtgcgtaattcatgatttttgctgcatattctacgaagacatcaagggtctctgcatctgactgtttttgttgcattggaatagGCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAG
species | Physcomitrella patens |
transcript | PP1S54_156V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAG GCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCTEST: gi|162280315|gb|FC456332.1|FC456332
genomic: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAGgtaacaggag ... attggaatagGCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCT
EST: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAG GCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCTEST: gi|100404582|gb|BY973650.1|BY973650
genomic: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAGgtaacaggag ... attggaatagGCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCT
EST: TGAAACTTTATATTACTCAAGAAAGTGTTCGTTCTCCATTTTCATCCAAG GCCCTAGATAATAGGGCACCAATAAATGCAACCCTTCAAGTTACGGGAGCTEST: gi|162233608|gb|FC409367.1|FC409367
genomic: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAGgtaacaggag ... attggaatagGCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCT
EST: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAG GCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCTEST: gi|208385555|gb|DC937100.1|DC937100
genomic: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAGgtaacaggag ... attggaatagGCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCT
EST: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAG GCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCTEST: gi|100429936|gb|BY978164.1|BY978164
genomic: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAGgtaacaggag ... attggaatagGCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCT
EST: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAG GCCCTAGATAATAGGCCACCAANNTAA-TGCA-CCCTTCA-GTTACGGNAGEST: gi|67572605|gb|BJ945429.1|BJ945429
genomic: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAGgtaacaggag ... attggaatagGCCCTAGATAATAGGCCACCAA--TAAATGCAACCCTTCAAGTTACGGGAG
EST: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAG GCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCTEST: gi|208361334|gb|DC935063.1|DC935063
genomic: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAGgtaacaggag ... attggaatagGCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCT
EST: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAG GCCCTAGATAATAGGCCACCEST: gi|100384770|gb|BY950760.1|BY950760
genomic: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAGgtaacaggag ... attggaatagGCCCTAGATAATAGGCCACC
EST: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAG GCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCTEST: gi|162223092|gb|FC399983.1|FC399983
genomic: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAGgtaacaggag ... attggaatagGCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCT
EST: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAG GCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCTEST: gi|162178167|gb|FC354885.1|FC354885
genomic: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAGgtaacaggag ... attggaatagGCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCT
EST: CCATTTTCATCCAAG GCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCTEST: gi|100407158|gb|BY974039.1|BY974039
genomic: CCATTTTCATCCAAGgtaacaggag ... attggaatagGCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCT
EST: TGGAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAG GCCCTAGANTA-TAGGCCACCAANTAA-TGCAACCCTTCAAGTTACGGGAGEST: gi|100387570|gb|BY988441.1|BY988441
genomic: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAGgtaacaggag ... attggaatagGCCCTAGA-TAATAGGCCACCAA-TAAATGCAACCCTTCAAGTTACGGGAG
EST: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAG GCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCTEST: gi|67578518|gb|BJ950685.1|BJ950685
genomic: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAGgtaacaggag ... attggaatagGCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCT
EST: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAG GCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCTEST: gi|208393441|gb|DC904059.1|DC904059
genomic: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAGgtaacaggag ... attggaatagGCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCT
EST: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAG GCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCTEST: gi|100415400|gb|BY975297.1|BY975297
genomic: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAGgtaacaggag ... attggaatagGCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCT
EST: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCA-G GCCCTAGANTA-TAGGCCACCAANNTAA-TGCA-CCCTTCAAGTTACGGGAEST: gi|100450131|gb|CJ974109.1|CJ974109
genomic: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAGgtaacaggag ... attggaatagGCCCTAGA-TAATAGGCCACCAA--TAAATGCAACCCTTCAAGTTACGGGA
EST: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCNAG GCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCGAGTTACGGGAGCTEST: gi|100364351|gb|BY984569.1|BY984569
genomic: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAGgtaacaggag ... attggaatagGCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCT
EST: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAG GCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCT
genomic: TGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAGgtaacaggag ... attggaatagGCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCT
tctacgaagacatcaagggtctctgcatctgactgtttttgttgcattggaatagGCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAG
atctgac putative branch site (score: 11)
tttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaggagttatatttaccttttatgcaggtttttgtacacgtcgtaatgagcgcatacacattgttttatcatccggatttgcgagtcttggcgacctggaaatgtgcgtaattcatgatttttgctgcatattctacgaagacatcaagggtctctgcatctgactgtttttgttgcattggaatagGCCCTAGATAATAGGCCACCAATAAATGCAACCCTTCAAGTTACGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA