1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtcttcatttgattatttcctatttttaatccttcacgtttctaacatacgttttgttattggttgaatttcataacgcacagcaagttacgcgtgagtgtgttcttatgatctaatggatatgctgcagGTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCTGACCCTGATTATTAG
species | Physcomitrella patens |
transcript | PP1S51_320V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAG GTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCTEST: gi|100396694|gb|BY953780.1|BY953780
genomic: GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAGgtcttcattt ... tatgctgcagGTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT
EST: GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAG GTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCTEST: gi|100434945|gb|BY960883.1|BY960883
genomic: GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAGgtcttcattt ... tatgctgcagGTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT
EST: GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAG GTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCTEST: gi|162201234|gb|FC378469.1|FC378469
genomic: GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAGgtcttcattt ... tatgctgcagGTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT
EST: GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAG GTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCTEST: gi|100448937|gb|CJ973236.1|CJ973236
genomic: GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAGgtcttcattt ... tatgctgcagGTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT
EST: GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAG GTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCTEST: gi|100411612|gb|BY992251.1|BY992251
genomic: GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAGgtcttcattt ... tatgctgcagGTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT
EST: GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAG GTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCTEST: gi|162194589|gb|FC369980.1|FC369980
genomic: GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAGgtcttcattt ... tatgctgcagGTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT
EST: GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAG GTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT
genomic: GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAGgtcttcattt ... tatgctgcagGTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT
acgcacagcaagttacgcgtgagtgtgttcttatgatctaatggatatgctgcagGTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCTGACCCTGATTATTAG
ttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcttcatttgattatttcctatttttaatccttcacgtttctaacatacgttttgttattggttgaatttcataacgcacagcaagttacgcgtgagtgtgttcttatgatctaatggatatgctgcagGTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCTGACCCTGATTATTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA