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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattggagtttatacctgtctctgtggatgttttttcttttaattatgttcgatcttgttgcgttctttacgttgccatcgtctccgtgtttttcgcttagagcacgattttgcaaatttcagGCAGATCTTAAGAAGGTGGACAGAAGCAGGACGCCATGGCTTATTGTTGTTCTACATGCTCCGTGGTACAACACAAACCATGCTCATCAGCATAATGGAG

Basic information

species Physcomitrella patens
transcript PP1S49_289V6.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S49_289V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ12808 (Selaginella moellendorffii), 3'ss of exon 2
gtattggagtttatacctgtctctgtggatgttttttcttttaattatgttcgatcttgttgcgttctttacgttgccatcgtctccgtgtttttcgcttagagcacgattttg-caaatttcagGCAGATCTTAAGAAGGTGGACAGAAGCAGGACGCCATGGCTTATTGTTGTTCTACATGCTCCGTGGTACAACACAAACCATGCTCATCAGCATAATGGAG
                                                               || |||| | |  | ||  | |        || ||||   |   ||| |   |  |  |||||||||||||  || | | ||  | |  ||||| || ||||| |||| ||||||||||||||||||||||||||  ||| | || || |   |  | || |
---------------------------------------------------------------gtacttttcttctctattttttttcgcagcttagcttttgg-gtgatgtgatcgtacctcagGCAGATCTTGCGAGGATTGATCGCAAAAGGACCCCTTGGCTCATTGCTGTTCTACATGCTCCGTGGTACAACAGCAACGAGGCGCACCGAAACGAAGGCG

upper sequence: PP1S49_289V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ16965 (Selaginella moellendorffii), 3'ss of exon 2
gtattggagtttatacctgtctctgtggatgttttttcttttaattatgttcgatcttgttgcgttctttacgttgccatcgtctccgtgtttttcgcttagagcacgattttgcaaatttcagGCAGATCTTAAGAAGGTGGACAGAAGCAGGACGCCATGGCTTATTGTTGTTCTACATGCTCCGTGGTACAACACAAACCATGCTCATCAGCATAATGGAG
                                                            | | ||  ||   |     |  | ||   | ||  |  || ||  |||   | |   |  |||||||||||||   ||| | ||  | |  || || || ||||| |||| ||||||||||||||||||||||||||  ||| | || || |   |  | || |
-----------------------------------------------------------gtacttttcttctctattttttttttcgcagcttagcttttggatgacgtgatcgt--acctcagGCAGATCTTGCAAAGATTGATCGCAAAAGAACCCCTTGGCTCATTGCTGTTCTACATGCTCCGTGGTACAACAGCAACGAGGCGCACCGAAACGAAGGCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162158208|gb|FC335251.1|FC335251
EST:     ACGATCCAAAATCTGCTCAATTCAAGTGGCTACAA                         GCAGATCTTAAGAAGGTGGACAGAAGCAGGACGCCATGGCTTATTGTTGTT
genomic: ACGATCCAAAATCTGCTCAATTCAAGTGGCTACAAgtattggagt ... caaatttcagGCAGATCTTAAGAAGGTGGACAGAAGCAGGACGCCATGGCTTATTGTTGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacgttgccatcgtctccgtgtttttcgcttagagcacgattttgcaaatttcagGCAGATCTTAAGAAGGTGGACAGAAGCAGGACGCCATGGCTTATTGTTGTTCTACATGCTCCGTGGTACAACACAAACCATGCTCATCAGCATAATGGAG
                                              aaatttca  TA-rich tract