1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atcgtagtaaagaaagtatttagttttttaacttttttcccatggactttgaagttgacaagactaacgtgtgaattttgggcgggattgatttgatcagTTTGCCCAGAAAGAGCTATTAAAGATTAATACTTACAAAGCACCTCGAGACAAGCTTGTGTGTATTCTCAACTGCTGCCGGGTGATCAATAATCTGCTTC
species | Physcomitrella patens |
transcript | PP1S49_250V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCCAGAGCATCTTGATATCCCACCAAAATTTGACGAGTCCTCATTGTTG TTTGCCCAGAAAGAGCTATTAAAGATTAATACTTACAAAGCACCTCGAGACEST: gi|162184606|gb|FC360804.1|FC360804
genomic: GTCCAGAGCATCTTGATATCCCACCAAAATTTGACGAGTCCTCATTGTTGgtatgtaact ... atttgatcagTTTGCCCAGAAAGAGCTATTAAAGATTAATACTTACAAAGCACCTCGAGAC
EST: GTCCAGAGCATCTTGATATCCCACCAAAATTTGACGAGTCCTCATTGTTG TTTGCCCAGAAAGAGCTATTAAAGATTAATACTTACAAAGCACCTCGAGAC
genomic: GTCCAGAGCATCTTGATATCCCACCAAAATTTGACGAGTCCTCATTGTTGgtatgtaact ... atttgatcagTTTGCCCAGAAAGAGCTATTAAAGATTAATACTTACAAAGCACCTCGAGAC
actttgaagttgacaagactaacgtgtgaattttgggcgggattgatttgatcagTTTGCCCAGAAAGAGCTATTAAAGATTAATACTTACAAAGCACCTCGAGACAAGCTTGTGTGTATTCTCAACTGCTGCCGGGTGATCAATAATCTGCTTC
tgaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcgtagtaaagaaagtatttagttttttaacttttttcccatggactttgaagttgacaagactaacgtgtgaattttgggcgggattgatttgatcagTTTGCCCAGAAAGAGCTATTAAAGATTAATACTTACAAAGCACCTCGAGACAAGCTTGTGTGTATTCTCAACTGCTGCCGGGTGATCAATAATCTGCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC