1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgttgaaccggttctcgtaaatgaatgctatttcaattatttgccacttctgtgaatgtttattaattatacgttgtttgtgacctttgatttccaacagGGTGCTGGAAGTTTGGGACTCTCAGCTGCTAATGAGGAGACGAAAATAAACATTGTCAGCTAGGAATCATGCTTTCTGAGAGGTAGCTGTTTTCATGCGT
species | Physcomitrella patens |
transcript | PP1S49_140V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAAGTATGGCTTCCAGAATTTCCTTCAAATTACAACCCAACCCAAAGAG GGTGCTGGAAGTTTGGAACTCTCAGCTGCTAATGAGGAGACGAAAATAAACEST: gi|18334582|gb|BJ166599.1|BJ166599
genomic: CAAAGTATGGCTTCCAGAATTTCCTTCAAATTACAACCCAACCCAAAGAGgtgatttgcc ... tttccaacagGGTGCTGGAAGTTTGGGACTCTCAGCTGCTAATGAGGAGACGAAAATAAAC
EST: CAAAGTATGGCTTCCAGAATTTCCTTCAAATTACAACCCAACCCAAAGAG GGTGCTGGAAGTTTGGGACTCTCAGCTGCTAATGAGGAGACGAAAATAAACEST: gi|18340675|gb|BJ172704.1|BJ172704
genomic: CAAAGTATGGCTTCCAGAATTTCCTTCAAATTACAACCCAACCCAAAGAGgtgatttgcc ... tttccaacagGGTGCTGGAAGTTTGGGACTCTCAGCTGCTAATGAGGAGACGAAAATAAAC
EST: CAAAGTATGGCTTCCAGAATTTCCTTCAAATTACAACCCAACCCAAAGAG GGTGCTGGAAGTTTGGGACTCTCAGCTGCTAATGAGGAGACGAAAATAAACEST: gi|37831729|gb|BJ589741.1|BJ589741
genomic: CAAAGTATGGCTTCCAGAATTTCCTTCAAATTACAACCCAACCCAAAGAGgtgatttgcc ... tttccaacagGGTGCTGGAAGTTTGGGACTCTCAGCTGCTAATGAGGAGACGAAAATAAAC
EST: CAAAGTATGGCTTCCAGAATTTCCTTCAAATTACAACCCAACCCAAAGAG GGTGCTGGAAGTTTGGGACTCTCAGCTGCTAATGAGGAGACGAAAATAAACEST: gi|18338695|gb|BJ170719.1|BJ170719
genomic: CAAAGTATGGCTTCCAGAATTTCCTTCAAATTACAACCCAACCCAAAGAGgtgatttgcc ... tttccaacagGGTGCTGGAAGTTTGGGACTCTCAGCTGCTAATGAGGAGACGAAAATAAAC
EST: CAAAGTATGGCTTCCAGAATTTCCTTCAAATTACAACCCAACCCAAAGAG GGTGCTGGAAGTTTGGGACTCTCAGCTGCTAATGAGGAGACGAAAATAAACEST: gi|37821155|gb|BJ579221.1|BJ579221
genomic: CAAAGTATGGCTTCCAGAATTTCCTTCAAATTACAACCCAACCCAAAGAGgtgatttgcc ... tttccaacagGGTGCTGGAAGTTTGGGACTCTCAGCTGCTAATGAGGAGACGAAAATAAAC
EST: CAAAGTATGGCTTCCAGAATTTCCTTCAAATTACAACCCAACCCAAAGAG GGTGCTGGAAGTTTGGGACTCTCAGCTGCTAATGAGGAGACGAAAATAAAC
genomic: CAAAGTATGGCTTCCAGAATTTCCTTCAAATTACAACCCAACCCAAAGAGgtgatttgcc ... tttccaacagGGTGCTGGAAGTTTGGGACTCTCAGCTGCTAATGAGGAGACGAAAATAAAC
acttctgtgaatgtttattaattatacgttgtttgtgacctttgatttccaacagGGTGCTGGAAGTTTGGGACTCTCAGCTGCTAATGAGGAGACGAAAATAAACATTGTCAGCTAGGAATCATGCTTTCTGAGAGGTAGCTGTTTTCATGCGT
tttcc CT-rich tract
tgtgaatgtttattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttgaaccggttctcgtaaatgaatgctatttcaattatttgccacttctgtgaatgtttattaattatacgttgtttgtgacctttgatttccaacagGGTGCTGGAAGTTTGGGACTCTCAGCTGCTAATGAGGAGACGAAAATAAACATTGTCAGCTAGGAATCATGCTTTCTGAGAGGTAGCTGTTTTCATGCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
tgttgaa