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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcagctctaggaagggtctggctggttgcggtggagctgatgacagaattgccaattcttagctggaagagatgtctgacgcgctgtttgtccctgtgaagGTGCAACTCCGAAGGCTGTACTGAGATTGATGGGTGTTCAAGGCATAACTATCTACCACGTGAAAAGCCATCTCCAG

Basic information

species Physcomitrella patens
transcript PP1S490_9V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100372742|gb|BY948681.1|BY948681
EST:     GCTCCATGAGAAATTCGTAATAGCTGTGGCGCACTTGGGAGGAGCAGATC                         GTGCAACTCCGAAGGCTGTACTGAGATTGATGGGTGTTCAAGGCATAACTA
genomic: GCTCCATGAGAAATTCGTAATAGCTGTGGCGCACTTGGGAGGAGCAGATCgtaagtcagc ... ccctgtgaagGTGCAACTCCGAAGGCTGTACTGAGATTGATGGGTGTTCAAGGCATAACTA
EST: gi|208355697|gb|DC910519.1|DC910519
EST:     GCTCCATGANAAATTCGTAATANCTGTGGCGCACTTGGGAGGAGCAGATC                         GTGCAACTCCAAAGGCTGTACTGAGATTGATGGGTGTTCAAGGCATANCTA
genomic: GCTCCATGAGAAATTCGTAATAGCTGTGGCGCACTTGGGAGGAGCAGATCgtaagtcagc ... ccctgtgaagGTGCAACTCCGAAGGCTGTACTGAGATTGATGGGTGTTCAAGGCATAACTA
EST: gi|100357347|gb|BY983812.1|BY983812
EST:     CTCCATGAGAAATTCGTAATAGCTGTGGCGCACTTGGGAGGAGCAGATTC                         GTGCAACTCCGAAGGCTGTACTGAGATTGATGGGGGTTC
genomic: CTCCATGAGAAATTCGTAATAGCTGTGGCGCACTTGGGAGGAGCAGAT-Cgtaagtcagc ... ccctgtgaagGTGCAACTCCGAAGGCTGTACTGAGATTGATGGGTGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgccaattcttagctggaagagatgtctgacgcgctgtttgtccctgtgaagGTGCAACTCCGAAGGCTGTACTGAGATTGATGGGTGTTCAAGGCATAACTATCTACCACGTGAAAAGCCATCTCCAG
                           gtctgac  putative branch site (score: 3)
                                        tttgtccct  putative PPT
       aattctta  TA-rich tract