1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaccaccatgttcatgttgtggctttgatgctcttcttcaccgtctgtattcgctctcctgttcagctagtctgctggcaaccagtgtaagaagagctaactgtcagtatcatgcatttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTATGGAAGATATCCTTGTGGAGCTCAAGAAGCAGATGGCAAGCCCGGCTA
species | Physcomitrella patens |
transcript | PP1S490_20V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|208363724|gb|DC954695.1|DC954695
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|162260754|gb|FC435406.1|FC435406
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|162211664|gb|FC387952.1|FC387952
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|67698924|gb|BJ959157.1|BJ959157
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|18348930|gb|BJ180979.1|BJ180979
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|162248628|gb|FC424481.1|FC424481
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|37843398|gb|BJ601406.1|BJ601406
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: CGGATCAACATGACTCATGTGAACTCGGAGACGGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACEST: gi|162248627|gb|FC424480.1|FC424480
genomic: CGGATCAACATGACTCATGTGAACTCGGAGAC-GGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATAC
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|67573475|gb|BJ946299.1|BJ946299
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|162277404|gb|FC453210.1|FC453210
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|37840937|gb|BJ598945.1|BJ598945
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|162224431|gb|FC399807.1|FC399807
genomic: GATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: ATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|162277403|gb|FC453209.1|FC453209
genomic: ATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: AGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|162176507|gb|FC352976.1|FC352976
genomic: AGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|67696855|gb|BJ957088.1|BJ957088
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|37835895|gb|BJ593907.1|BJ593907
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: ATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACEST: gi|37834644|gb|BJ592656.1|BJ592656
genomic: ATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGAC-GGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATAC
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|100447101|gb|CJ971400.1|CJ971400
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|37821329|gb|BJ579395.1|BJ579395
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|15320319|gb|BI488125.1|BI488125
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|208388041|gb|DC941694.1|DC941694
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|37832091|gb|BJ590103.1|BJ590103
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|100446255|gb|CJ970554.1|CJ970554
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|100440583|gb|BY962270.1|BY962270
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|208388103|gb|DC933181.1|DC933181
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|162245980|gb|FC424378.1|FC424378
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|18355140|gb|BJ187199.1|BJ187199
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|18372883|gb|BJ204485.1|BJ204485
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTEST: gi|67575457|gb|BJ948281.1|BJ948281
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
EST: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTG GTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
genomic: GATTCCATTCTCGGATCAACATGACTCATGTGAACTCGGAGACGGGATTGgtaaccacca ... catttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACT
gtctgctggcaaccagtgtaagaagagctaactgtcagtatcatgcatttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTATGGAAGATATCCTTGTGGAGCTCAAGAAGCAGATGGCAAGCCCGGCTA
agctaac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaccaccatgttcatgttgtggctttgatgctcttcttcaccgtctgtattcgctctcctgttcagctagtctgctggcaaccagtgtaagaagagctaactgtcagtatcatgcatttcgtagGTTGATCCAAGATATTTTCCTTTGCTGGCAAATTGGCGCCGTAACCATACTATGGAAGATATCCTTGTGGAGCTCAAGAAGCAGATGGCAAGCCCGGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG