1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtttgcatcaacattcctagctgaaatctaattttagaaaagtcttacatttagacaggtcgtgtcattgtatgtcatgcccccgactcctgttaagacgtggaactgtgacttgtgttgcctggcagGGGCATCTCCTTCGGATATCGAAGCCTATTTGAACAGGGTGGAGCGCCGAGGTGCAAGCGAAACCACAGCCCAGATAATTTCAGCTCACCAGCTAGGAAG
species | Physcomitrella patens |
transcript | PP1S48_250V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTTGAAGTTGGCTCACAACAATTGGGTGCAGAGCGATTTAATGCGAAGG GGGCATCTCCTTCGGATATCGAAGCCTATTTGAACAGGGTGGAGCGCCGAGEST: gi|37823578|gb|BJ581644.1|BJ581644
genomic: TGTTGAAGTTGGCTCACAACAATTGGGTGCAGAGCGATTTAATGCGAAGGgtaagtttgc ... tgcctggcagGGGCATCTCCTTCGGATATCGAAGCCTATTTGAACAGGGTGGAGCGCCGAG
EST: TGTTGAAGTTGGCTCACAACAATTGGGTGCAGAGCGATTTAATGCGAAGG GGGCATCTCCTTCGGATATCGAAGCCTATTTGAACAGGGTGGAGCGCCGAGEST: gi|162225836|gb|FC402128.1|FC402128
genomic: TGTTGAAGTTGGCTCACAACAATTGGGTGCAGAGCGATTTAATGCGAAGGgtaagtttgc ... tgcctggcagGGGCATCTCCTTCGGATATCGAAGCCTATTTGAACAGGGTGGAGCGCCGAG
EST: TGTTGAAGTTGGCTCACAACAATTGGGTGCAGAGCGATTTAATGCGAAGG GGGCATCTCCTTCGGATATCGAAGCCTATTTGAACAGGGTGGAGCGCCGAGEST: gi|162160718|gb|FC336422.1|FC336422
genomic: TGTTGAAGTTGGCTCACAACAATTGGGTGCAGAGCGATTTAATGCGAAGGgtaagtttgc ... tgcctggcagGGGCATCTCCTTCGGATATCGAAGCCTATTTGAACAGGGTGGAGCGCCGAG
EST: TGTTGAAGTTGGCTCACAACAATTGGGTGCAGAGCGATTTAATGCGAAGG GGGCATCTCCTTCGGATATCGAAGCCTATTTGAACAGGGTGGAGCGCCGAGEST: gi|162256706|gb|FC433224.1|FC433224
genomic: TGTTGAAGTTGGCTCACAACAATTGGGTGCAGAGCGATTTAATGCGAAGGgtaagtttgc ... tgcctggcagGGGCATCTCCTTCGGATATCGAAGCCTATTTGAACAGGGTGGAGCGCCGAG
EST: TGTTGAAGTTGGCTCACAACAATTGGGTGCAGAGCGATTTAATGCGAAGG GGGCATCTCCTTCGGATATCGAAGCCTATTTGAACAGGGTGGAGCGCCGAG
genomic: TGTTGAAGTTGGCTCACAACAATTGGGTGCAGAGCGATTTAATGCGAAGGgtaagtttgc ... tgcctggcagGGGCATCTCCTTCGGATATCGAAGCCTATTTGAACAGGGTGGAGCGCCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttgcatcaacattcctagctgaaatctaattttagaaaagtcttacatttagacaggtcgtgtcattgtatgtcatgcccccgactcctgttaagacgtggaactgtgacttgtgttgcctggcagGGGCATCTCCTTCGGATATCGAAGCCTATTTGAACAGGGTGGAGCGCCGAGGTGCAAGCGAAACCACAGCCCAGATAATTTCAGCTCACCAGCTAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA