1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtcaatcaggttcatgtacttgacgcgcataaaggtttaatgaccagatttgaggtggtcgatgcgtaatgttttgatactacctgttgccatccacagGGTGTGTTGTTATATGGGCCTCCTGGGACTGGTAAAACTCTTTTAGCACGAGCAATTGCCAGCAACATTGATGCTAATTTTCTGAAG
species | Physcomitrella patens |
transcript | PP1S47_46V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGGCATT-AACCNTCCAAAG GGTGTGTTGTTATATGGGCNTCCTGGGACTGGTAAAACTCTTTTAGCACGEST: gi|208398538|gb|DC912383.1|DC912383
genomic: TTGGCATTAAACC-TCCAAAGgtattcactg ... ccatccacagGGTGTGTTGTTATATGGGCCTCCTGGGACTGGTAAAACTCTTTTAGCACG
EST: CGTTAATGAATCCTGAACTCTTTCTGCGAGTTGGCATTAAACCTCCAAAG GGTGTGTTGTTATATGGGCCTCCTGGGACTGGTAAA-CTCTTTTAGCACGAEST: gi|100405000|gb|BY991388.1|BY991388
genomic: CGTTAATGAATCCTGAACTCTTTCTGCGAGTTGGCATTAAACCTCCAAAGgtattcactg ... ccatccacagGGTGTGTTGTTATATGGGCCTCCTGGGACTGGTAAAACTCTTTTAGCACGA
EST: TTAATGAATCCTGAAACTCTT-CTGCGAGTTGGCATAAAAC-TCCCAAAG G-TGTGTTGTTATATGGGCCTCCTGGGACTGGTAAAACTCTTTTAGCACGEST: gi|162269527|gb|FC445083.1|FC445083
genomic: TTAATGAATCCTGAA-CTCTTTCTGCGAGTTGGCATTAAACCTCC-AAAGgtattcactg ... ccatccacagGGTGTGTTGTTATATGGGCCTCCTGGGACTGGTAAAACTCTTTTAGCACG
EST: CGTTAATGAATCCTGAACTCTTTCTGCGAGTTGGCATTAAACCTCCAAAG GGTGTGTTGTTATATGGGCCTCCTGGGACTGGTAAAACTCTTTTAGCACGA
genomic: CGTTAATGAATCCTGAACTCTTTCTGCGAGTTGGCATTAAACCTCCAAAGgtattcactg ... ccatccacagGGTGTGTTGTTATATGGGCCTCCTGGGACTGGTAAAACTCTTTTAGCACGA
cagatttgaggtggtcgatgcgtaatgttttgatactacctgttgccatccacagGGTGTGTTGTTATATGGGCCTCCTGGGACTGGTAAAACTCTTTTAGCACGAGCAATTGCCAGCAACATTGATGCTAATTTTCTGAAG
ttttgat putative branch site (score: 4)
taatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcaatcaggttcatgtacttgacgcgcataaaggtttaatgaccagatttgaggtggtcgatgcgtaatgttttgatactacctgttgccatccacagGGTGTGTTGTTATATGGGCCTCCTGGGACTGGTAAAACTCTTTTAGCACGAGCAATTGCCAGCAACATTGATGCTAATTTTCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG