Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataagaattttccactctttcggaagtctaaacccggttcaattagattctttcatggtgatgtgatcaggattgttaattttggttttggtctcgaaggtgttttcccttttttcatttttaaatcttttattcaagagtattaatcatggtgtttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCCGTAAAGCACGGTAGGCCCGGTATTGGAGCTACCCACTCTTCGCGATTTA

Basic information

species Physcomitrella patens
transcript PP1S47_42V6.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S47_42V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ26636 (Selaginella moellendorffii), 3'ss of exon 3
gtaataagaattttccactctttcggaagtctaaacccggttcaattagattctttcatggtgatgtgatcaggattgttaattttggttttggtctcgaaggtgttttcccttttttcatttttaaatcttttattcaagagtattaatcatggtgtttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCCGTAAAGCACGGTAGGCCCGGTATTGGAGCTACCCACTCTTCGCGATTTA
                                                                                                  |   | |     | | | | | |  ||    ||  | ||| | | |  |        || |     ||||||||||||||| ||||||||  |||  ||||||||||||||||||||||| || ||||||||  | |||||||| || || || ||||| ||  | ||||
--------------------------------------------------------------------------------------------------gtgagcgagcgtcttgtctgcgtgctt----ctcgtgttctaaacttctctcgcctctggtgac--gcagCCCGAGATGATCGGACACTACCTGGGAGAGTTCTCCATCTCGTACAAGCCAGTCAAGCACGGGCGTCCCGGTATCGGTGCCACACACTCGTCCAGGTTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6102252|gb|AW126722.1|AW126722
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAG
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAG
EST: gi|7067374|gb|AW497229.1|AW497229
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTCTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162227580|gb|FC403522.1|FC403522
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162221576|gb|FC397593.1|FC397593
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|7147695|gb|AW509666.1|AW509666
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATNTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162227187|gb|FC403844.1|FC403844
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162221336|gb|FC398120.1|FC398120
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162233580|gb|FC410962.1|FC410962
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|67701344|gb|BJ961577.1|BJ961577
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|67724173|gb|BJ974432.1|BJ974432
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|7046944|gb|AW476781.1|AW476781
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162264291|gb|FC441393.1|FC441393
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162277884|gb|FC454347.1|FC454347
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162215437|gb|FC391933.1|FC391933
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162232848|gb|FC407501.1|FC407501
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|19790792|gb|BQ042057.1|BQ042057
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|67726407|gb|BJ976666.1|BJ976666
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|7067085|gb|AW496940.1|AW496940
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATGTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|208348761|gb|DC909796.1|DC909796
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|7207504|gb|AW561504.1|AW561504
EST:     CGTCATTGGTGTGTATAACGGCAAGCACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: CGTCATTGGTGTGTATAACGGCAAG-ACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162239764|gb|FC417163.1|FC417163
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|67578444|gb|BJ950611.1|BJ950611
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|67573073|gb|BJ945897.1|BJ945897
EST:     CGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: CGTCATTGGTGTGTATAACGGCAAGACCTTTAACCA-GGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|19783351|gb|BQ039997.1|BQ039997
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|208385042|gb|DC911330.1|DC911330
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162259872|gb|FC436007.1|FC436007
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|15262097|gb|BI437407.1|BI437407
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|6167045|gb|AW145364.1|AW145364
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162248361|gb|FC419755.1|FC419755
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|15327504|gb|BI488258.1|BI488258
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|67577697|gb|BJ949864.1|BJ949864
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAA
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAA
EST: gi|67717901|gb|BJ968160.1|BJ968160
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162234864|gb|FC409311.1|FC409311
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162235948|gb|FC411691.1|FC411691
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|67696457|gb|BJ956690.1|BJ956690
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|6167554|gb|AW145818.1|AW145818
EST:     GTCATTGNGTGTGTATAACGGCAAGAACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGG
genomic: GTCATTG-GTGTGTATAACGGCAAGA-CCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGG
EST: gi|162277883|gb|FC454346.1|FC454346
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|67710246|gb|BJ965909.1|BJ965909
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|7207481|gb|AW561482.1|AW561482
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162199029|gb|FC372380.1|FC372380
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|67721504|gb|BJ971763.1|BJ971763
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162254108|gb|FC429632.1|FC429632
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162239357|gb|FC416561.1|FC416561
EST:     GTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162227581|gb|FC403523.1|FC403523
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|208400853|gb|DC925133.1|DC925133
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162225347|gb|FC401164.1|FC401164
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162218517|gb|FC395094.1|FC395094
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|67722819|gb|BJ973078.1|BJ973078
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162261488|gb|FC438324.1|FC438324
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|67717312|gb|BJ967571.1|BJ967571
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162239358|gb|FC416562.1|FC416562
EST:     GTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|67700571|gb|BJ960804.1|BJ960804
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162264292|gb|FC441394.1|FC441394
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162227186|gb|FC403843.1|FC403843
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162259873|gb|FC436008.1|FC436008
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|7147889|gb|AW509811.1|AW509811
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCANGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|162234863|gb|FC409310.1|FC409310
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
EST: gi|67725829|gb|BJ976088.1|BJ976088
EST:     GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAG                         CCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC
genomic: GCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 32 (downstream exon)
Score: 34

TGTGAGGACACACCTCCGCAACATGATCATTGTTCCAGAGATGATCGGTAGCGTCATTGGTGTGTATAACGGCAAGACCTTTAACCAGGTCGAGATCAAGgtaataagaa ... ttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCCGTAAAGCACGGTAGGCCCGGTATTGGAGCTACCCACTCTTCGCGATTTA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttcatttttaaatcttttattcaagagtattaatcatggtgtttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCCGTAAAGCACGGTAGGCCCGGTATTGGAGCTACCCACTCTTCGCGATTTA
                              tattaat  putative branch site (score: 34)
                                          tgtttcttt  putative PPT
      atttttaaatctttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaataagaattttccactctttcggaagtctaaacccggttcaattagattctttcatggtgatgtgatcaggattgttaattttggttttggtctcgaaggtgttttcccttttttcatttttaaatcttttattcaagagtattaatcatggtgtttctttgcagCCCGAGATGATTGGACACTATTTGGCTGAGTTCTCCATCTCGTACAAGCCCGTAAAGCACGGTAGGCCCGGTATTGGAGCTACCCACTCTTCGCGATTTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT