1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcaattttaaccaccgaagaaagttgctgctgggaggtactggccttgaattctgcattgatttggatgagaagtctcaaagagtcttgacattgtccagCTCTGCGGCCAGACGGTTGGTGAGCTGCGAACAGTACGAGACATGCATCAACGGAAGGCAGAAATGGCTGGACTGGCGGATGCGTTCGTAGCTCTTCCAG
species | Physcomitrella patens |
transcript | PP1S47_321V6.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGGGCAAGGAT CTCTGCGGCCAGACGGTTGGTGAGCTGCGAACAGTACGAGACATGCATCAAEST: gi|67576568|gb|BJ949392.1|BJ949392
genomic: ATGGGCAAGGATgtacgcttct ... cattgtccagCTCTGCGGCCAGACGGTTGGTGAGCTGCGAACAGTACGAGACATGCATCAA
EST: AATTCCGACGGCGTTAATGGGCAAGGAT CTCTGCGGCCAGACGGTTGGTGAGCTGCGAACAGTACGAGACATGCATCAA
genomic: AATTCCGACGGCGTTAATGGGCAAGGATgtacgcttct ... cattgtccagCTCTGCGGCCAGACGGTTGGTGAGCTGCGAACAGTACGAGACATGCATCAA
ttgaattctgcattgatttggatgagaagtctcaaagagtcttgacattgtccagCTCTGCGGCCAGACGGTTGGTGAGCTGCGAACAGTACGAGACATGCATCAACGGAAGGCAGAAATGGCTGGACTGGCGGATGCGTTCGTAGCTCTTCCAG
tcttgac putative branch site (score: 3)
attgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaattttaaccaccgaagaaagttgctgctgggaggtactggccttgaattctgcattgatttggatgagaagtctcaaagagtcttgacattgtccagCTCTGCGGCCAGACGGTTGGTGAGCTGCGAACAGTACGAGACATGCATCAACGGAAGGCAGAAATGGCTGGACTGGCGGATGCGTTCGTAGCTCTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA