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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgcttcttcacgaggtaaagcacaccttagaaaacctgtaatatagtggaaaaacgtcaggataagaagataaagattattatattatattatactatattatttatttttctattcaaattcatgtaaaatcctttcactctcctccacgttgaaaactcaagaaaacaaatttgggtcacttgctcagATGCCAGCACCTGCGCCGGCGCCAACCATGCAACCAGCTCAGCAGTACATGCAACAGCAGCAACAACTCCGGATGATGAGCCAACAGAACAGTATGATCC

Basic information

species Physcomitrella patens
transcript PP1S47_284V6.4
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18347797|gb|BJ179844.1|BJ179844
EST:     TGTATTTGGCTGCCATAGCTGATGCTCAGCCACAAGGCCCATCTTCGCAG                         ATGCCAGCACCTGCGCCGGCGCCAACCATGCAACCAGCTCAGCAGTACATG
genomic: TGTATTTGGCTGCCATAGCTGATGCTCAGCCACAAGGCCCATCTTCGCAGgtatgttgct ... acttgctcagATGCCAGCACCTGCGCCGGCGCCAACCATGCAACCAGCTCAGCAGTACATG
EST: gi|18350126|gb|BJ182177.1|BJ182177
EST:     TGTATTTGGCTGCCATAGCTGATGCTCAGCCACAAGGCCCATCTTCGCAG                         ATGCCAGCACCTGCGCCGGCGCCAACCATGCAACCAGCTCAGCAGTACATG
genomic: TGTATTTGGCTGCCATAGCTGATGCTCAGCCACAAGGCCCATCTTCGCAGgtatgttgct ... acttgctcagATGCCAGCACCTGCGCCGGCGCCAACCATGCAACCAGCTCAGCAGTACATG
EST: gi|22131534|gb|BQ826664.1|BQ826664
EST:     TGTATTTGGCTGCCATAGCTGATGCTCAGCCACAAGGCCCATCTTCGCAG                         ATGCCAGCACCTGCGCCGGCGCCAACCATGCAACCAGCTCAGCAGTACATG
genomic: TGTATTTGGCTGCCATAGCTGATGCTCAGCCACAAGGCCCATCTTCGCAGgtatgttgct ... acttgctcagATGCCAGCACCTGCGCCGGCGCCAACCATGCAACCAGCTCAGCAGTACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcactctcctccacgttgaaaactcaagaaaacaaatttgggtcacttgctcagATGCCAGCACCTGCGCCGGCGCCAACCATGCAACCAGCTCAGCAGTACATGCAACAGCAGCAACAACTCCGGATGATGAGCCAACAGAACAGTATGATCC
                                              cttgctc  CT-rich tract
                          aagaaaacaaattt  TA-rich tract