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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cattttgtttgtcgtaatcccggttagaacagtagagatgttaacaactattagatttagagactatttgaactgagaggttttggtatctgcgtaacagATCCGAGCTTTGGCATGGCCAGCAGTTCTTGTTAGTCTGGTGTCACAAAGTGCCAG

Basic information

species Physcomitrella patens
transcript PP1S47_276V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162185138|gb|FC362272.1|FC362272
EST:     TTGGACCTCAGAATTATGATCTTATACCAGCGGCAAGAATATATGTACAG                         ATCCGAGCTTTGGCATGGCCAGCAGTTCTTGTTAGTCTGGTGTCACAAAGT
genomic: TTGGACCTCAGAATTATGATCTTATACCAGCGGCAAGAATATATGTACAGgtacatatat ... tgcgtaacagATCCGAGCTTTGGCATGGCCAGCAGTTCTTGTTAGTCTGGTGTCACAAAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactattagatttagagactatttgaactgagaggttttggtatctgcgtaacagATCCGAGCTTTGGCATGGCCAGCAGTTCTTGTTAGTCTGGTGTCACAAAGTGCCAG
     ttagattta  TA-rich tract