1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtccagagtttggagttcagcttgcattgagaacgttgtcgtttgtcatcgtcgaaaacagagcagatcagcatagcactaacgactgggtttgctgcagGCATGGGCGATCACAATCATGCCCGTATTGTCGAGACAGTCTACGGCGTGTTAACTCATGTGACCTGTGGATATTCACCGACTCGGCAGACATTGAAGAC
species | Physcomitrella patens |
transcript | PP1S47_230V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCGCTTCCGGATNGCAATCACGTAATGTGCATTACGTGCTACCGTGATTG GCATGGGCGATCACAATCATGCCCGTATTGTCGAGACAGTCTACGGCGTGTEST: gi|162224662|gb|FC401910.1|FC401910
genomic: GCGCTTCCGGATTGCAATCACGTAATGTGCATTACGTGCTACCGTGATTGgtaagtgcgt ... tttgctgcagGCATGGGCGATCACAATCATGCCCGTATTGTCGAGACAGTCTACGGCGTGT
EST: CCGGATTGCAATCACGTAATGTGCATTACGTGCTACCGTGATTG GCATGGGCGATCACAATCATGCCCGTATTGTCGAGACAGTCTACGGCGTGTEST: gi|162254442|gb|FC430252.1|FC430252
genomic: CCGGATTGCAATCACGTAATGTGCATTACGTGCTACCGTGATTGgtaagtgcgt ... tttgctgcagGCATGGGCGATCACAATCATGCCCGTATTGTCGAGACAGTCTACGGCGTGT
EST: GCGCTTCCGGATTGCAATCACGTAATGTGCATTACGTGCTACCGTGATTG GCATGGGCGATCACAATCATGCCCGTATTGTCGAGACAGTCTACGGCGTGTEST: gi|37823926|gb|BJ581992.1|BJ581992
genomic: GCGCTTCCGGATTGCAATCACGTAATGTGCATTACGTGCTACCGTGATTGgtaagtgcgt ... tttgctgcagGCATGGGCGATCACAATCATGCCCGTATTGTCGAGACAGTCTACGGCGTGT
EST: TGCTACCGTGATTG NCATGGGCGATCACAATCATGCCCGTATTGTCGAGACAGTCTACGGCGTGT
genomic: TGCTACCGTGATTGgtaagtgcgt ... tttgctgcagGCATGGGCGATCACAATCATGCCCGTATTGTCGAGACAGTCTACGGCGTGT
tcatcgtcgaaaacagagcagatcagcatagcactaacgactgggtttgctgcagGCATGGGCGATCACAATCATGCCCGTATTGTCGAGACAGTCTACGGCGTGTTAACTCATGTGACCTGTGGATATTCACCGACTCGGCAGACATTGAAGAC
cactaac putative branch site (score: 1)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccagagtttggagttcagcttgcattgagaacgttgtcgtttgtcatcgtcgaaaacagagcagatcagcatagcactaacgactgggtttgctgcagGCATGGGCGATCACAATCATGCCCGTATTGTCGAGACAGTCTACGGCGTGTTAACTCATGTGACCTGTGGATATTCACCGACTCGGCAGACATTGAAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA