1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtttcagttgaacttgctcttttcgaagttagcacaaattacatggaaagatgaccaatttacaaggatttggtactgcggttattgctcaagtatgctgttggtgaccagactatgttttcagtctaacatctttctactcgtgtcaacagGAGCGAGATCCCATAGAAAGAATTAGGAAACTCTTATTGTCTAACAATATTGCTACAGTTGCGGAGCTGAAG
species | Physcomitrella patens |
transcript | PP1S47_1V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCCAGGCAGCACTTACCGAACTCGTGACGAGATCTCTGGTGTTCGTCAA GAGCGAGATCCCATAGAAAGAATTAGGAAACTCTTATTGTCTAACAATATTEST: gi|37828681|gb|BJ586693.1|BJ586693
genomic: ACCCAGGCAGCACTTACCGAACTCGTGACGAGATCTCTGGTGTTCGTCAAgtaagtttca ... gtgtcaacagGAGCGAGATCCCATAGAAAGAATTAGGAAACTCTTATTGTCTAACAATATT
EST: ACCCAGGCAGCACTTACCGAACTCGTGACGAGATCTCTGGTGTTCGTCAA GAGCGAGATCCCATAGAAAGAATTAGGAAACTCTTATTGTCTAACAATATTEST: gi|208383133|gb|DC919580.1|DC919580
genomic: ACCCAGGCAGCACTTACCGAACTCGTGACGAGATCTCTGGTGTTCGTCAAgtaagtttca ... gtgtcaacagGAGCGAGATCCCATAGAAAGAATTAGGAAACTCTTATTGTCTAACAATATT
EST: ACCCAGGCAGCACTTACCGAACTCGTGACGAGATCTCTGGTGTTCGTCAA GAGCGAGATCCCATAGAAAGAATTAGGAAACTCTTATTGTCTAACAATATTEST: gi|208398653|gb|DC920548.1|DC920548
genomic: ACCCAGGCAGCACTTACCGAACTCGTGACGAGATCTCTGGTGTTCGTCAAgtaagtttca ... gtgtcaacagGAGCGAGATCCCATAGAAAGAATTAGGAAACTCTTATTGTCTAACAATATT
EST: ACCCAGGCAGCACTTACCGAACTCGTGACGAGATCTCTGGTGTTCGTCAA GAGCGAGATCCCATAGAAAGAATTAGGAAACTCTTATTGTCTAACAATATTEST: gi|208373023|gb|DC948788.1|DC948788
genomic: ACCCAGGCAGCACTTACCGAACTCGTGACGAGATCTCTGGTGTTCGTCAAgtaagtttca ... gtgtcaacagGAGCGAGATCCCATAGAAAGAATTAGGAAACTCTTATTGTCTAACAATATT
EST: ACCCAGGCAGCACTTACCGAACTCGTGACGAGATCTCTGGTGTTCGTCAA GAGCGAGATCCCATAGAAAGAATTAGGAAACTCTTATTGTCTAACAATATTEST: gi|208371918|gb|DC948321.1|DC948321
genomic: ACCCAGGCAGCACTTACCGAACTCGTGACGAGATCTCTGGTGTTCGTCAAgtaagtttca ... gtgtcaacagGAGCGAGATCCCATAGAAAGAATTAGGAAACTCTTATTGTCTAACAATATT
EST: ACCCAGGCAGCACTTACCGAACTCGTGACGAGATCTCTGGTGTTCGTCAA GAGCGAGATCCCATAGAAAGAATTAGGAAACTCTTATTGTCTAACAATATTEST: gi|37834368|gb|BJ592380.1|BJ592380
genomic: ACCCAGGCAGCACTTACCGAACTCGTGACGAGATCTCTGGTGTTCGTCAAgtaagtttca ... gtgtcaacagGAGCGAGATCCCATAGAAAGAATTAGGAAACTCTTATTGTCTAACAATATT
EST: ACCCAGGCAGCACTTACCGAACTCGTGACGAGATCTCTGGTGTTCGTCAA GAGCGAGATCCCATAGAAAGAATTAGGAAACTCTTATTGTCTAACAATATTEST: gi|37839308|gb|BJ597316.1|BJ597316
genomic: ACCCAGGCAGCACTTACCGAACTCGTGACGAGATCTCTGGTGTTCGTCAAgtaagtttca ... gtgtcaacagGAGCGAGATCCCATAGAAAGAATTAGGAAACTCTTATTGTCTAACAATATT
EST: ACCCAGGCAGCACTTACCGAACTCGTGACGAGATCTCTGGTGTTCGTCAA GAGCGAGATCCCATAGAAAGAATTAGGAAACTCTTATTGTCTAACAATATT
genomic: ACCCAGGCAGCACTTACCGAACTCGTGACGAGATCTCTGGTGTTCGTCAAgtaagtttca ... gtgtcaacagGAGCGAGATCCCATAGAAAGAATTAGGAAACTCTTATTGTCTAACAATATT
ctgttggtgaccagactatgttttcagtctaacatctttctactcgtgtcaacagGAGCGAGATCCCATAGAAAGAATTAGGAAACTCTTATTGTCTAACAATATTGCTACAGTTGCGGAGCTGAAG
gtctaac putative branch site (score: 3)
tatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttcagttgaacttgctcttttcgaagttagcacaaattacatggaaagatgaccaatttacaaggatttggtactgcggttattgctcaagtatgctgttggtgaccagactatgttttcagtctaacatctttctactcgtgtcaacagGAGCGAGATCCCATAGAAAGAATTAGGAAACTCTTATTGTCTAACAATATTGCTACAGTTGCGGAGCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG