1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtcttctttgtagatttctttttttgatcgttctttgttatgttatgtccatctgctacttgatagtatggattgggatggaaggcgttaacttcttttgtgcctttgcagTCACCAAGATTCGTGGATCCATTAAACGTGACAGCCATGGCTTGTCCAGCGTTGCCGCTCTGCCCCCTTGCTATCGCTGAAGCTGAACGAGGAGCGCCAG
species | Physcomitrella patens |
transcript | PP1S47_171V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTCTTGGCGACCGAAAATCGCCAAGAGACTTGCTGCTGTTGGAATGGTG TCACCAAGATTCGTGGATCCATTAAACGTGACAGCCATGGCTTGTCCAGCGEST: gi|162192176|gb|FC368325.1|FC368325
genomic: CTTCTTGGCGACCGAAAATCGCCAAGAGACTTGCTGCTGTTGGAATGGTGgtgagtcttc ... gcctttgcagTCACCAAGATTCGTGGATCCATTAAACGTGACAGCCATGGCTTGTCCAGCG
EST: CTTCTTGGCGACCGAAAATCGCCAAGAGACTTGCTGCTGTTGGAATGGTG TCACCAAGATTCGTGGATCCATTAAACGTGACAGCCATGGCTTGTCCAGCGEST: gi|162196654|gb|FC373800.1|FC373800
genomic: CTTCTTGGCGACCGAAAATCGCCAAGAGACTTGCTGCTGTTGGAATGGTGgtgagtcttc ... gcctttgcagTCACCAAGATTCGTGGATCCATTAAACGTGACAGCCATGGCTTGTCCAGCG
EST: CTTCTTGGCGACCGAAAATCGCCAAGAGACTTGCTGCTGTTGGAATGGTG TCACCAAGATTCGTGGATCCATTAAACGTGACAGCCATGGCTTGTCCAGCGEST: gi|67569839|gb|BJ942663.1|BJ942663
genomic: CTTCTTGGCGACCGAAAATCGCCAAGAGACTTGCTGCTGTTGGAATGGTGgtgagtcttc ... gcctttgcagTCACCAAGATTCGTGGATCCATTAAACGTGACAGCCATGGCTTGTCCAGCG
EST: CTTCTTGGCGACCGAAAATCGCCAAGAGACTTGCTGCTGTTGGAATGGTG TCACCAAGATTCGTGGATCCATTAAACGTGACAGCCATGGCTTGTCCAGCGEST: gi|162196655|gb|FC373801.1|FC373801
genomic: CTTCTTGGCGACCGAAAATCGCCAAGAGACTTGCTGCTGTTGGAATGGTGgtgagtcttc ... gcctttgcagTCACCAAGATTCGTGGATCCATTAAACGTGACAGCCATGGCTTGTCCAGCG
EST: CTTCTTGGCGACCGAAAATCGCCAAGAGACTTGCTGCTGTTGGAATGGTG TCACCAAGATTCGTGGATCCATTAAACGTGACAGCCATGGCTTGTCCAGCG
genomic: CTTCTTGGCGACCGAAAATCGCCAAGAGACTTGCTGCTGTTGGAATGGTGgtgagtcttc ... gcctttgcagTCACCAAGATTCGTGGATCCATTAAACGTGACAGCCATGGCTTGTCCAGCG
tacttgatagtatggattgggatggaaggcgttaacttcttttgtgcctttgcagTCACCAAGATTCGTGGATCCATTAAACGTGACAGCCATGGCTTGTCCAGCGTTGCCGCTCTGCCCCCTTGCTATCGCTGAAGCTGAACGAGGAGCGCCAG
cgttaac putative branch site (score: 3)
cttcttttgtgccttt CT-rich tract
atagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcttctttgtagatttctttttttgatcgttctttgttatgttatgtccatctgctacttgatagtatggattgggatggaaggcgttaacttcttttgtgcctttgcagTCACCAAGATTCGTGGATCCATTAAACGTGACAGCCATGGCTTGTCCAGCGTTGCCGCTCTGCCCCCTTGCTATCGCTGAAGCTGAACGAGGAGCGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG