1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatacaatgtcatgatgcacatgtcttgttatttcgactcgccttcaatttcacggttgactttaggagtgtttttatgtgaacattctcactaagcgaggacagctgctctacatctgtgttcaaccgtatcgatgtagtgaatgatggatttgctgcgtacttatttttggtgttatttgcagGATTGACGAGAACATGGATGAGTCTCTTTCAAATGTCGAAGGAGCACAAACTCAGCTTCTTAAGTACCTTGACAGCATCTCATCAAATCGATGGCTTATT
species | Physcomitrella patens |
transcript | PP1S47_13V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTACCCAGTTGGCCTCCATGGTTGCCCAGCATGGAGAAATTGCTATCAG GATTGACGAGAACATGGATGAGTCTCTTTCAAATGTCGAAGGAGCACAAACEST: gi|37845418|gb|BJ603426.1|BJ603426
genomic: TTTACCCAGTTGGCCTCCATGGTTGCCCAGCATGGAGAAATTGCTATCAGgtatacaatg ... ttatttgcagGATTGACGAGAACATGGATGAGTCTCTTTCAAATGTCGAAGGAGCACAAAC
EST: TTTACCCAGTTGGCCTCCATGGTTGCCCAGCATGGAGAAATTGCTATCAG GATTGACGAGAACATGGATGAGTCTCTTTCAAATGTCGAAGGAGCACAAAC
genomic: TTTACCCAGTTGGCCTCCATGGTTGCCCAGCATGGAGAAATTGCTATCAGgtatacaatg ... ttatttgcagGATTGACGAGAACATGGATGAGTCTCTTTCAAATGTCGAAGGAGCACAAAC
atcgatgtagtgaatgatggatttgctgcgtacttatttttggtgttatttgcagGATTGACGAGAACATGGATGAGTCTCTTTCAAATGTCGAAGGAGCACAAACTCAGCTTCTTAAGTACCTTGACAGCATCTCATCAAATCGATGGCTTATT
tacttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacaatgtcatgatgcacatgtcttgttatttcgactcgccttcaatttcacggttgactttaggagtgtttttatgtgaacattctcactaagcgaggacagctgctctacatctgtgttcaaccgtatcgatgtagtgaatgatggatttgctgcgtacttatttttggtgttatttgcagGATTGACGAGAACATGGATGAGTCTCTTTCAAATGTCGAAGGAGCACAAACTCAGCTTCTTAAGTACCTTGACAGCATCTCATCAAATCGATGGCTTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT