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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattcttcttctagactaaaatttgcaatggtgagaatttttttggattttctttgtctgatcactagattctcagagtgtcattagatttctttcagttgaaatttttgtgattttgtgatgaatactttgtttgtgcatggcagATGAACTTCATGCACTTGCAATTGGTCGCAAAATAGTGAAAAATATTCACTTTGCGGGGATTACCAACAGATCCTCCCCTAGCAACGTTATGAGTGAGGA

Basic information

species Physcomitrella patens
transcript PP1S47_126V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162162730|gb|FC337784.1|FC337784
EST:     TGCGGCACTGCATTGTAAAATATCCGGTGTTTCGGACCACTTCGCTACTG                         ATGAACTTCATGCACTTGCAATTGGTCGCAAAATAGTGAAAAATATTCACT
genomic: TGCGGCACTGCATTGTAAAATATCCGGTGTTTCGGACCACTTCGCTACTGgtaaattctt ... tgcatggcagATGAACTTCATGCACTTGCAATTGGTCGCAAAATAGTGAAAAATATTCACT
EST: gi|162180420|gb|FC355841.1|FC355841
EST:     TGCGGCACTGCATTGTAAAATATCCGGTGTTTCGGACCACTTCGCTACTG                         ATGAACTTCATGCACTTGCAATTGGTCGCAAAATAGTGAAAAATATTCACT
genomic: TGCGGCACTGCATTGTAAAATATCCGGTGTTTCGGACCACTTCGCTACTGgtaaattctt ... tgcatggcagATGAACTTCATGCACTTGCAATTGGTCGCAAAATAGTGAAAAATATTCACT
EST: gi|162179961|gb|FC356032.1|FC356032
EST:     TGCGGCACTGCATTGTAAAATATCCGGTGTTTCGGACCACTTCGCTACTG                         ATGAACTTCATGCACTTGCAATTGGTCGCAAAATAGTGAAAAATATTCACT
genomic: TGCGGCACTGCATTGTAAAATATCCGGTGTTTCGGACCACTTCGCTACTGgtaaattctt ... tgcatggcagATGAACTTCATGCACTTGCAATTGGTCGCAAAATAGTGAAAAATATTCACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcagttgaaatttttgtgattttgtgatgaatactttgtttgtgcatggcagATGAACTTCATGCACTTGCAATTGGTCGCAAAATAGTGAAAAATATTCACTTTGCGGGGATTACCAACAGATCCTCCCCTAGCAACGTTATGAGTGAGGA
          aaatttttgtgatttt  TA-rich tract