1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atctggactgccctaatcattctactcatagacatttgatgttcctggaggtccatgagctatcatacctgacgtgaatcgtttttggattttgtcgcagAAAGTTTGCGAAAAATGCGATGGGTATGGAGTGCAATCTTGTCATGTTTGCCAGGGGCGTGGTATTCTTACCTGGGAGGGCAAGCTTCGGCATACTGACC
species | Physcomitrella patens |
transcript | PP1S475_17V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATTGAAGACTGCTGTGAAGAATCAAGGCTTTATGCCTGGCACTCCACAG AAAGTTTGCGAAAAATGCGATGGGTATGGAGTGCAATCTTGTCATGTTTGCEST: gi|162263797|gb|FC439662.1|FC439662
genomic: GATTGAAGACTGCTGTGAAGAATCAAGGCTTTATGCCTGGCACTCCACAGgttattagtt ... tttgtcgcagAAAGTTTGCGAAAAATGCGATGGGTATGGAGTGCAATCTTGTCATGTTTGC
EST: GATTGAAGACTGCTGTGAAGAATCAAGGCTTTATGCCTGGCACTCCACAG AAAGTTTGCGAAAAATGCGATGGGTATGGAGTGCAATCTTGTCATGTTTGCEST: gi|208345867|gb|DC921066.1|DC921066
genomic: GATTGAAGACTGCTGTGAAGAATCAAGGCTTTATGCCTGGCACTCCACAGgttattagtt ... tttgtcgcagAAAGTTTGCGAAAAATGCGATGGGTATGGAGTGCAATCTTGTCATGTTTGC
EST: GATTGAAGACTGCTGTGAAGAATCAAGGCTTTATGCCTGGCACTCCACAG AAAGTTTGCGAAAAATGCGATGGGTATGGAGTGCAATCTTGTCATGTTTGC
genomic: GATTGAAGACTGCTGTGAAGAATCAAGGCTTTATGCCTGGCACTCCACAGgttattagtt ... tttgtcgcagAAAGTTTGCGAAAAATGCGATGGGTATGGAGTGCAATCTTGTCATGTTTGC
tggaggtccatgagctatcatacctgacgtgaatcgtttttggattttgtcgcagAAAGTTTGCGAAAAATGCGATGGGTATGGAGTGCAATCTTGTCATGTTTGCCAGGGGCGTGGTATTCTTACCTGGGAGGGCAAGCTTCGGCATACTGACC
acctgac putative branch site (score: 3)
ttttgtc putative PPT
tatcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctggactgccctaatcattctactcatagacatttgatgttcctggaggtccatgagctatcatacctgacgtgaatcgtttttggattttgtcgcagAAAGTTTGCGAAAAATGCGATGGGTATGGAGTGCAATCTTGTCATGTTTGCCAGGGGCGTGGTATTCTTACCTGGGAGGGCAAGCTTCGGCATACTGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT