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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actgggaagcgttttgatccgacgattagattttttggttgggtcttgcagatttaatggtgatgtctgcttatactttgtgacccggtatgtactgcagCTTCGGATCAGTTTGAAGCGGAGCAATGGAGGTTCCCAAACGAATCAGATTGGAACTTGATCTCTCCGCTACCCCACATTTTGCAGTGCGCAACCCGTCA

Basic information

species Physcomitrella patens
transcript PP1S473_1V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162157012|gb|FC333374.1|FC333374
EST:     GCCGGAGGCTATGGCTACCAGCAATGACTTTGTATCGAATATACTTAACG                         CTTCGGATCAGTTTGAAGCGGAGCAATGGAGGTTCCCAAACGAATCAGATT
genomic: GCCGGAGGCTATGGCTACCAGCAATGACTTTGTATCGAATATACTTAACGgtgaggaatt ... tgtactgcagCTTCGGATCAGTTTGAAGCGGAGCAATGGAGGTTCCCAAACGAATCAGATT
EST: gi|162256900|gb|FC433002.1|FC433002
EST:     GCCGGAGGCTATGGCTACCAGCAATGACTTTGTATCGAATATACTTAACG                         CTTCGGATCAGTTTGAAGCGGAGCAATGGAGGTTCCCAAACGAATCAGATT
genomic: GCCGGAGGCTATGGCTACCAGCAATGACTTTGTATCGAATATACTTAACGgtgaggaatt ... tgtactgcagCTTCGGATCAGTTTGAAGCGGAGCAATGGAGGTTCCCAAACGAATCAGATT
EST: gi|162256899|gb|FC433001.1|FC433001
EST:     GCCGGAGGCTATGGCTACCAGCAATGACTTTGTATCGAATATACTTAACG                         CTTCGGATCAGTTTGAAGCGGAGCAATGGAGGTTCCCAAACGAATCAGATT
genomic: GCCGGAGGCTATGGCTACCAGCAATGACTTTGTATCGAATATACTTAACGgtgaggaatt ... tgtactgcagCTTCGGATCAGTTTGAAGCGGAGCAATGGAGGTTCCCAAACGAATCAGATT
EST: gi|162185767|gb|FC362323.1|FC362323
EST:     GCCGGAGGCTATGGCTACCAGCAATGACTTTGTATCGAATATACTTAACG                         CTTCGGATCAGTTTGAAGCGGAGCAATGGAGGTTCCCAAACGAATCAGATT
genomic: GCCGGAGGCTATGGCTACCAGCAATGACTTTGTATCGAATATACTTAACGgtgaggaatt ... tgtactgcagCTTCGGATCAGTTTGAAGCGGAGCAATGGAGGTTCCCAAACGAATCAGATT
EST: gi|67694722|gb|BJ954955.1|BJ954955
EST:     GCCGGAGGCTATGGCTACCAGCAATGACTTTGTATCGAATATACTTAACG                         CTTCGGATCAGTTTGAAGCGGAGCAATGGAGGTTCCCAAACGAATCAGATT
genomic: GCCGGAGGCTATGGCTACCAGCAATGACTTTGTATCGAATATACTTAACGgtgaggaatt ... tgtactgcagCTTCGGATCAGTTTGAAGCGGAGCAATGGAGGTTCCCAAACGAATCAGATT
EST: gi|162265407|gb|FC440733.1|FC440733
EST:     GCCGGAGGCTATGGCTACCAGCAATGACTTTGTATCGAATATACTTAACG                         CTTCGGATCAGTTTGAAGCGGAGCAATGGAGGTTCCCAAACGAATCAGATT
genomic: GCCGGAGGCTATGGCTACCAGCAATGACTTTGTATCGAATATACTTAACGgtgaggaatt ... tgtactgcagCTTCGGATCAGTTTGAAGCGGAGCAATGGAGGTTCCCAAACGAATCAGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcagatttaatggtgatgtctgcttatactttgtgacccggtatgtactgcagCTTCGGATCAGTTTGAAGCGGAGCAATGGAGGTTCCCAAACGAATCAGATTGGAACTTGATCTCTCCGCTACCCCACATTTTGCAGTGCGCAACCCGTCA
      atttaat  putative branch site (score: 4)
                         ttatacttt  TA-rich tract