1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagccttcacgaaactgaactttgcccgcggtaaatgtgacgataatattaggtcttttgcatggttttcaaaggtttgttcttttcctttcttctcacttttaagattgtgcctggtgactgacagGTGTCTATTTATGACATGGACTGGACCATACCAACGGCAGTTTTCTTTGGGAACGAGTTCAT
species | Physcomitrella patens |
transcript | PP1S46_84V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TACGACAACGGGGTTACCGAATTGCTGTCACACACATCGCTCCCGACACT GTGTCTATTTATGACATGGACTGGACCATACCAACGGCAGTTTTCTTTGGGEST: gi|162243420|gb|FC425116.1|FC425116
genomic: TACGACAACGGGGTTACCGAATTGCTGTCACACACATCGCTCCCGACACTgtgagccttc ... tgactgacagGTGTCTATTTATGACATGGACTGGACCATACCAACGGCAGTTTTCTTTGGG
EST: CCGAATTGCTGTCACACACATCGCTCCCGACACT GTGTCTATTTATGACATGGACTGGACCATACCAACGGCAGTTTTCTTTGGGEST: gi|162243421|gb|FC425117.1|FC425117
genomic: CCGAATTGCTGTCACACACATCGCTCCCGACACTgtgagccttc ... tgactgacagGTGTCTATTTATGACATGGACTGGACCATACCAACGGCAGTTTTCTTTGGG
EST: TACGACAACGGGGTTACCGAATTGCTGTCACACACATCGCTCCCGACACT GTGTCTATTTATGACATGGACTGGACCATACCAACGGCAGTTTTCTTTGGGEST: gi|162261611|gb|FC438044.1|FC438044
genomic: TACGACAACGGGGTTACCGAATTGCTGTCACACACATCGCTCCCGACACTgtgagccttc ... tgactgacagGTGTCTATTTATGACATGGACTGGACCATACCAACGGCAGTTTTCTTTGGG
EST: ACGACAACGGGGTTACCGAATTGCTGTCACACACATCGCTCCCGACACT GTGTCTATTTATGACATGGACTGGACCATACCAACGGCAGTTTTCTTTGGGEST: gi|162257444|gb|FC433513.1|FC433513
genomic: ACGACAACGGGGTTACCGAATTGCTGTCACACACATCGCTCCCGACACTgtgagccttc ... tgactgacagGTGTCTATTTATGACATGGACTGGACCATACCAACGGCAGTTTTCTTTGGG
EST: TACGACAACGGGGTTACCGAATTGCTGTCACACACATCGCTCCCGACACT GTGTCTATNTATGACATGGAC
genomic: TACGACAACGGGGTTACCGAATTGCTGTCACACACATCGCTCCCGACACTgtgagccttc ... tgactgacagGTGTCTATTTATGACATGGAC
aggtttgttcttttcctttcttctcacttttaagattgtgcctggtgactgacagGTGTCTATTTATGACATGGACTGGACCATACCAACGGCAGTTTTCTTTGGGAACGAGTTCAT
ttctcac putative branch site (score: 4)
ttttaagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagccttcacgaaactgaactttgcccgcggtaaatgtgacgataatattaggtcttttgcatggttttcaaaggtttgttcttttcctttcttctcacttttaagattgtgcctggtgactgacagGTGTCTATTTATGACATGGACTGGACCATACCAACGGCAGTTTTCTTTGGGAACGAGTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA