1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atttcgtgcaagaaactttgtcgatttttgaaccttgacattgaagatggggatgaattttatgagagtgtaacgaattttcttttttctttgaaaacagGTCTGTGATTTGTCATCGCTACAGCAAGTCAAAGACTTTGCTGCTGAATACACATCATCTGGTCGACCTCTTCACATACTG
species | Physcomitrella patens |
transcript | PP1S46_64V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGTTGGGGAGATCAAGGCCAAAACTGGGAACCCAAATGTGTCCCTTCAG GTCTGTGATTTGTCATCGCTACAGCAAGTCAAAGACTTTGCTGCTGAATACEST: gi|208353889|gb|DC942787.1|DC942787
genomic: CTGTTGGGGAGATCAAGGCCAAAACTGGGAACCCAAATGTGTCCCTTCAGgtcactaatc ... ttgaaaacagGTCTGTGATTTGTCATCGCTACAGCAAGTCAAAGACTTTGCTGCTGAATAC
EST: CTGTTGGGGAGATCAAGGCCAAAACTGGGAACCCAAATGTGTCCCTTCAG GTCTGTGATTTGTCATCGCTACAGCAAGTCAAAGACTTTGCTGCTGAATACEST: gi|162159315|gb|FC334622.1|FC334622
genomic: CTGTTGGGGAGATCAAGGCCAAAACTGGGAACCCAAATGTGTCCCTTCAGgtcactaatc ... ttgaaaacagGTCTGTGATTTGTCATCGCTACAGCAAGTCAAAGACTTTGCTGCTGAATAC
EST: CTGTTGGGGAGATCAAGGCCAAAACTGGGAACCCAAATGTGTCCCTTCAG GTCTGTGATTTGTCATCGCTACAGCAAGTCAAAGACTTTGCTGCTGAATACEST: gi|208356778|gb|DC906440.1|DC906440
genomic: CTGTTGGGGAGATCAAGGCCAAAACTGGGAACCCAAATGTGTCCCTTCAGgtcactaatc ... ttgaaaacagGTCTGTGATTTGTCATCGCTACAGCAAGTCAAAGACTTTGCTGCTGAATAC
EST: CTGTTGGGGAGATCAAGGCCAAAACTGGGAACCCAAATGTGTCCCTTCAG GTCTGTGATTTGTCATCGCTACAGCAAGTCAAAGACTTTGCTGCTGAATACEST: gi|18325412|gb|BJ157408.1|BJ157408
genomic: CTGTTGGGGAGATCAAGGCCAAAACTGGGAACCCAAATGTGTCCCTTCAGgtcactaatc ... ttgaaaacagGTCTGTGATTTGTCATCGCTACAGCAAGTCAAAGACTTTGCTGCTGAATAC
EST: CTGTTGGGGAGATCAAGGCCAAAACTGGGAACCCAAATGTGTCCCTTCAG GTCTGTGATTTGTCATCGCTACAGCAAGTCAAAGACTTTGCTGCTGAATACEST: gi|162189180|gb|FC365987.1|FC365987
genomic: CTGTTGGGGAGATCAAGGCCAAAACTGGGAACCCAAATGTGTCCCTTCAGgtcactaatc ... ttgaaaacagGTCTGTGATTTGTCATCGCTACAGCAAGTCAAAGACTTTGCTGCTGAATAC
EST: CTGTTGGGGAGATCAAGGCCAAAACTGGGAACCCAAATGTGTCCCTTCAG GTCTGTGATTTGTCATCGCTACAGCAAGTCAAAGACTTTGCTGCTGAATAC
genomic: CTGTTGGGGAGATCAAGGCCAAAACTGGGAACCCAAATGTGTCCCTTCAGgtcactaatc ... ttgaaaacagGTCTGTGATTTGTCATCGCTACAGCAAGTCAAAGACTTTGCTGCTGAATAC
gatggggatgaattttatgagagtgtaacgaattttcttttttctttgaaaacagGTCTGTGATTTGTCATCGCTACAGCAAGTCAAAGACTTTGCTGCTGAATACACATCATCTGGTCGACCTCTTCACATACTG
gtgtaac putative branch site (score: 3)
ttttcttttttcttt putative PPT
aattttcttttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttcgtgcaagaaactttgtcgatttttgaaccttgacattgaagatggggatgaattttatgagagtgtaacgaattttcttttttctttgaaaacagGTCTGTGATTTGTCATCGCTACAGCAAGTCAAAGACTTTGCTGCTGAATACACATCATCTGGTCGACCTCTTCACATACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT