1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgtttgttttgatactttaacaagaattctagagttgagactaatactctttgactacacctgatcgtagctgataatgatttaatgttgaattttgtagGTGCGACTAGTGGCTCATCAGGGTTGTGTCAATAGAGTTAGGGCTATGACTCAACAATCTCATATCGTTGCCACGTGGGGTGATTCAGGGTATGTTCAG
species | Physcomitrella patens |
transcript | PP1S46_317V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAGAGGGGGCTCCTAATCAGCCAATTCAGTCCAAGAA-CCAATTTTTAAG GTGCGACTAGTGGCTCATCAGGGTTGTGTCAATAGAGTTAGGGCTATGACTEST: gi|162167971|gb|FC344909.1|FC344909
genomic: TAGAGGGGGCTCCTAATCAGCCAATTCAGTCCAAGAAACCAATTTTTAAGgtatgccaac ... aattttgtagGTGCGACTAGTGGCTCATCAGGGTTGTGTCAATAGAGTTAGGGCTATGACT
EST: TAGAGGGGGCTCCTAATCAGCCAATTCAGTCCAAGAAACCAATTTTTAAG GTGCGACTAGTGGCTCATCAGGGTTGTGTCAATAGAGTTAGGGCTATGACTEST: gi|100446205|gb|CJ970504.1|CJ970504
genomic: TAGAGGGGGCTCCTAATCAGCCAATTCAGTCCAAGAAACCAATTTTTAAGgtatgccaac ... aattttgtagGTGCGACTAGTGGCTCATCAGGGTTGTGTCAATAGAGTTAGGGCTATGACT
EST: TAGAGGGGGCTCCTAATCAGCCAATTCAGTCCAAGAAACCAATTTTTAAG GTGCGACTAGTGGCTCATCAGGGTTGTGTCAATAGAGTTAGGGCTATGACT
genomic: TAGAGGGGGCTCCTAATCAGCCAATTCAGTCCAAGAAACCAATTTTTAAGgtatgccaac ... aattttgtagGTGCGACTAGTGGCTCATCAGGGTTGTGTCAATAGAGTTAGGGCTATGACT
actctttgactacacctgatcgtagctgataatgatttaatgttgaattttgtagGTGCGACTAGTGGCTCATCAGGGTTGTGTCAATAGAGTTAGGGCTATGACTCAACAATCTCATATCGTTGCCACGTGGGGTGATTCAGGGTATGTTCAG
atttaat putative branch site (score: 5)
ataatgatttaatgtt TA-rich tract