1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttcgtcttccaaatctcctagggttccgtttacgtattgctgtattcaatgttgtatacctggaccttccagaatcacatccagaggcaactttttgctcttgacctaattttttcttgtatttgcagATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGCTGAAGACGATGATTGATAATTCTTGATGAGGCACTGTTTTAGGGCCTGT
species | Physcomitrella patens |
transcript | PP1S46_244V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAG ATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGCEST: gi|37850996|gb|BJ609004.1|BJ609004
genomic: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAGgttcgtcttc ... gtatttgcagATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGC
EST: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAG ATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGCEST: gi|15261393|gb|BI436703.1|BI436703
genomic: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAGgttcgtcttc ... gtatttgcagATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGC
EST: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAG ATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGCEST: gi|7067255|gb|AW497110.1|AW497110
genomic: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAGgttcgtcttc ... gtatttgcagATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGC
EST: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAG ATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGCEST: gi|19790253|gb|BQ041775.1|BQ041775
genomic: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAGgttcgtcttc ... gtatttgcagATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGC
EST: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAG ATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGCEST: gi|18370173|gb|BJ201775.1|BJ201775
genomic: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAGgttcgtcttc ... gtatttgcagATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGC
EST: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAG ATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGCEST: gi|18360431|gb|BJ192493.1|BJ192493
genomic: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAGgttcgtcttc ... gtatttgcagATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGC
EST: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAG ATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGCEST: gi|162270791|gb|FC446820.1|FC446820
genomic: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAGgttcgtcttc ... gtatttgcagATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGC
EST: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAG ATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGCEST: gi|67507561|gb|BJ940443.1|BJ940443
genomic: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAGgttcgtcttc ... gtatttgcagATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGC
EST: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAG ATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGCEST: gi|18360389|gb|BJ192451.1|BJ192451
genomic: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAGgttcgtcttc ... gtatttgcagATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGC
EST: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAG ATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGCEST: gi|18363001|gb|BJ195073.1|BJ195073
genomic: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAGgttcgtcttc ... gtatttgcagATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGC
EST: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAG ATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGCEST: gi|67569504|gb|BJ942328.1|BJ942328
genomic: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAGgttcgtcttc ... gtatttgcagATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGC
EST: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAG ATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGCEST: gi|67692772|gb|BJ953005.1|BJ953005
genomic: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAGgttcgtcttc ... gtatttgcagATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGC
EST: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAG ATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGCEST: gi|67691336|gb|BJ951569.1|BJ951569
genomic: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAGgttcgtcttc ... gtatttgcagATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGC
EST: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAG ATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGCEST: gi|15728429|gb|BI740783.1|BI740783
genomic: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAGgttcgtcttc ... gtatttgcagATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGC
EST: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAG ATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGCEST: gi|37838403|gb|BJ596411.1|BJ596411
genomic: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAGgttcgtcttc ... gtatttgcagATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGC
EST: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAG ATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGC
genomic: GAGTTTGTGGATGGGGCATTCACGGGCAACTTGGGAGAAGTCCTCATCAGgttcgtcttc ... gtatttgcagATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGC
atcacatccagaggcaactttttgctcttgacctaattttttcttgtatttgcagATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGCTGAAGACGATGATTGATAATTCTTGATGAGGCACTGTTTTAGGGCCTGT
acctaat putative branch site (score: 11)
ttttttcttgtattt CT-rich tract
taattttttcttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtcttccaaatctcctagggttccgtttacgtattgctgtattcaatgttgtatacctggaccttccagaatcacatccagaggcaactttttgctcttgacctaattttttcttgtatttgcagATGCAACAATGTCATGTATCTGAGAGGTGTTCCTGAGGACGAAGATGCTGCTGAAGACGATGATTGATAATTCTTGATGAGGCACTGTTTTAGGGCCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA