1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaacggttagaaccttgttcatttgtccttctatattatcttgtttttgccactacttgttgtactcataaacgtcgcgaactgaataccatcgtcatctgcaacgtccctcaaaataagattatcacatgatttaatctctatcattctcacatgattttggcttcagGTACCCAAGGCTGGTAAAGGCAAGAAAAAAGCTAAGCCTGTGAACAAAGATCGTTTCATCAGTAAGATGTTTCTGCGAGGGGATTCCGTTATCATTGTCT
species | Physcomitrella patens |
transcript | PP1S46_237V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCGTCACTGCAATATGGTTCTGGAAAACGTGAAGGAGATGTGGACAGAG GTACCCAAGGCTGGTAAAGGCAAGAAAAAAGCTAAGCCTGTGAACAAAGATEST: gi|162224435|gb|FC399811.1|FC399811
genomic: ACCGTCACTGCAATATGGTTCTGGAAAACGTGAAGGAGATGTGGACAGAGgtaacggtta ... ttggcttcagGTACCCAAGGCTGGTAAAGGCAAGAAAAAAGCTAAGCCTGTGAACAAAGAT
EST: ACCGTCACTGCAATATGGTTCTGGAAAACGTGAAGGAGATGTGGACAGAG GTACCCAAGGCTGGTAAAGGCAAGAAAAAAGCTAAGCCTGTGAACAAAGATEST: gi|67696374|gb|BJ956607.1|BJ956607
genomic: ACCGTCACTGCAATATGGTTCTGGAAAACGTGAAGGAGATGTGGACAGAGgtaacggtta ... ttggcttcagGTACCCAAGGCTGGTAAAGGCAAGAAAAAAGCTAAGCCTGTGAACAAAGAT
EST: ACCGTCACTGCAATATGGTTCTGGAAAACGTGAAGGAGATGTGGACAGAG GTACCCAAGGCTGGTAAAGGCAAGAAAAAAGCTAAGCCTGTGAACAAAGATEST: gi|67572995|gb|BJ945819.1|BJ945819
genomic: ACCGTCACTGCAATATGGTTCTGGAAAACGTGAAGGAGATGTGGACAGAGgtaacggtta ... ttggcttcagGTACCCAAGGCTGGTAAAGGCAAGAAAAAAGCTAAGCCTGTGAACAAAGAT
EST: ACCGTCACTGCAATATGGTTCTGGAAAACGTGAAGGAGATGTGGACAGAG GTACCCAAGGCTGGTAAAGGCAAGAAAAAAGCTAAGCCTGTGAACAAAGATEST: gi|6102213|gb|AW126683.1|AW126683
genomic: ACCGTCACTGCAATATGGTTCTGGAAAACGTGAAGGAGATGTGGACAGAGgtaacggtta ... ttggcttcagGTACCCAAGGCTGGTAAAGGCAAGAAAAAAGCTAAGCCTGTGAACAAAGAT
EST: ACCGTCACTGCAATATGGTTCTGGAAAACGTGAAGGAGATGTGGACAGAG GTACCCAAGGCTGGTAAAGGCAAGAAAAAAGCTAAGCCTGTGAACAAAGAT
genomic: ACCGTCACTGCAATATGGTTCTGGAAAACGTGAAGGAGATGTGGACAGAGgtaacggtta ... ttggcttcagGTACCCAAGGCTGGTAAAGGCAAGAAAAAAGCTAAGCCTGTGAACAAAGAT
aataagattatcacatgatttaatctctatcattctcacatgattttggcttcagGTACCCAAGGCTGGTAAAGGCAAGAAAAAAGCTAAGCCTGTGAACAAAGATCGTTTCATCAGTAAGATGTTTCTGCGAGGGGATTCCGTTATCATTGTCT
ttctcac putative branch site (score: 13)
atgatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacggttagaaccttgttcatttgtccttctatattatcttgtttttgccactacttgttgtactcataaacgtcgcgaactgaataccatcgtcatctgcaacgtccctcaaaataagattatcacatgatttaatctctatcattctcacatgattttggcttcagGTACCCAAGGCTGGTAAAGGCAAGAAAAAAGCTAAGCCTGTGAACAAAGATCGTTTCATCAGTAAGATGTTTCTGCGAGGGGATTCCGTTATCATTGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG