Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgatatgtttctggtttagcaaggcctacgtggttatttgattttttgtaaatgtagagttgcgaattgatatggttttgaaatatctatgttaatgtccacgggctgatgtggttgatgttagtgctattcagGTTGTTTTGCTGTTTCAAAAGATAGAGGGGGTAGAAGTTTGTCTCTTCGGCATGTACGTTCAAGAGTTTGGGGTTGAATGCTCTCTTCCAAATCAGCGAA

Basic information

species Physcomitrella patens
transcript PP1S462_17V6.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S462_17V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA08G24290.1 (Glycine max), 3'ss of exon 11
gtgcgatatgtttctggtttagcaaggcctacgtggttatttgattttttgtaaatgtagagttgcgaattgatatggttttgaaatatctatgttaatgtccacgggctgatgtggttgatgttagtgctattc-agGTTGTTTTGCTGTTTCAAAAGATAGAGGGGGTAGAAGTTTGTCTCTTCGGCATGTACGTTCAAGAGTTTGGGGTTGAATGCTCTCTTCCAAATCAGCGAA
                                              |  ||  || || || ||   |||      |   | |||  ||  ||    |||   |     |||||   ||    ||    |||||| |||| |||||| |||||||||||||||| || || |||||||| || || |||||||| |||||||| |||||   ||||||     |||| ||||||||  
---------------------------------------------gtgatgagaaagttgatttatcaatctgatcgtaatcgaatcattaatc---atgaatattatttgatgcccttagcttt----ctattccagGTAGTTTTGTTGTTTCAAAAGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaatatctatgttaatgtccacgggctgatgtggttgatgttagtgctattcagGTTGTTTTGCTGTTTCAAAAGATAGAGGGGGTAGAAGTTTGTCTCTTCGGCATGTACGTTCAAGAGTTTGGGGTTGAATGCTCTCTTCCAAATCAGCGAA
        tatgttaat  TA-rich tract