1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagggtctagttctacgtgggagtgaggagttattgtttctcctcttttttattaccgcatcttgtttgctaggttgatgctatgaatacaattcgtactgtactaaatgacatcgggtttgatgacagGTGGACCTTAAAGAAGGACCATTAGATCAATTCACTCATGACATGGAACCTTTTCTTCGCAAGCAAGGCATGCCTGTTCGGCTAAATAGAG
species | Physcomitrella patens |
transcript | PP1S431_4V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGGCAGCATTGCTACTGAGACG GTGGACNTTAAAGAAGGACCATTAGATCAATTCACTCATGACATGGAACCTEST: gi|18354793|gb|BJ186851.1|BJ186851
genomic: CTGGCAGCATTGCTACTGAGACGgtaagggtct ... ttgatgacagGTGGACCTTAAAGAAGGACCATTAGATCAATTCACTCATGACATGGAACCT
EST: AGTTTGAGGAGTTGGATTTCGCACGGACTGGCAGCATTGCTACTGAGACG GTGGACCTTAAAGAAGGACCATTAGATCAATTCACTCATGACATGGAACCTEST: gi|208355823|gb|DC930186.1|DC930186
genomic: AGTTTGAGGAGTTGGATTTCGCACGGACTGGCAGCATTGCTACTGAGACGgtaagggtct ... ttgatgacagGTGGACCTTAAAGAAGGACCATTAGATCAATTCACTCATGACATGGAACCT
EST: AGTTTGAGGAGTTGGATTTCGCACGGACTGGCAGCATTGCTACTGAGACG GTGGACCTTAAAGAAGGACCATTAGATCAATTCACTCATGACATGGAACCT
genomic: AGTTTGAGGAGTTGGATTTCGCACGGACTGGCAGCATTGCTACTGAGACGgtaagggtct ... ttgatgacagGTGGACCTTAAAGAAGGACCATTAGATCAATTCACTCATGACATGGAACCT
ttgatgctatgaatacaattcgtactgtactaaatgacatcgggtttgatgacagGTGGACCTTAAAGAAGGACCATTAGATCAATTCACTCATGACATGGAACCTTTTCTTCGCAAGCAAGGCATGCCTGTTCGGCTAAATAGAG
aatacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagggtctagttctacgtgggagtgaggagttattgtttctcctcttttttattaccgcatcttgtttgctaggttgatgctatgaatacaattcgtactgtactaaatgacatcgggtttgatgacagGTGGACCTTAAAGAAGGACCATTAGATCAATTCACTCATGACATGGAACCTTTTCTTCGCAAGCAAGGCATGCCTGTTCGGCTAAATAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG